SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51624

Length: 555 nt

UniGene Fasta

>sp_v3.0_unigene51624
ATCATCTTTATGTGCATCAGTTTTTATTGGATATATGCCTGTGTAATAAAATGAAATACAAATTCTCAAGGCTGGTAGGAATGGTGGATGCAGGGATGGGCTCAGTAGCAGGTCGGTTCCACCTGCTGATCAGTTGCAGTTGAGAGTGGTCCTATACACGGAGATTTGGATGACGAAATTACAGGCCTGTACCACAAAGTTTCACAGTTAAAATATGAACCCCCAACAGGGTATCCTCCAGAGGAGTGTCATTTGGAGTAGAGTAAGAAGTGCTTGAATCAAAGCCTTCGATCCACTATGATGGGAGGTACTTCCTTGAAAGTTGAACGTAGATTCCAGCATATTGGGATAAGAAAGCATAGTTATTTGATGGAACTTATCTGTTGCCTAATCTCTGTACAGAGGCCTCTTGAAGTTGGGATTTGGTTTCTTGAAGTTGAGAGCCTTTTGAAGCTGGGATTTGGTCTCTTGAAGCTGCCAGCCCCTTGAAGCTGAGAACTTCAATAGTTGTTGGTCTCACTTGCAAGGAATTAATGCTGGAAGCCAATCCTTCAC

Ace file of the UniGene sp_v3.0_unigene51624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	6.0e-08	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNB6

Fln msg: Separated hits, possible frame ERROR between 148 and 151, query STOP codon too far from subject stop. Distance to subject end: 57 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 131

Fln protein: NEIQILKAGRNGGCRDGLSSRSVPPADQLQLRxxPIHGDLDDEITGLYHKVSQLKYEPPTGYPPEECHLE*

Protein Length: 72

Fln nts: ATCATCTTTATGTGCATCAGTTTTTATTGGATATATGCCTGTGTAATAAA_-_ATGAAATACAAATTCTCAAGGCTGGTAGGAATGGTGGATGCAGGGATGGGCTCAGTAGCAGGTCGGTTCCACCTGCTGATCAGTTGCAGTTGAGAGTxxxTCCTATACACGGAGATTTGGATGACGAAATTACAGGCCTGTACCACAAAGTTTCACAGTTAAAATATGAACCCCCAACAGGGTATCCTCCAGAGGAGTGTCATTTGGAGTAGAGTAAGAAGTGCTTGAATCAAAGCCTTCGATCCACTATGATGGGAGGTACTTCCTTGAAAGTTGAACGTAGATTCCAGCATATTGGGATAAGAAAGCATAGTTATTTGATGGAACTTATCTGTTGCCTAATCTCTGTACAGAGGCCTCTTGAAGTTGGGATTTGGTTTCTTGAAGTTGAGAGCCTTTTGAAGCTGGGATTTGGTCTCTTGAAGCTGCCAGCCCCTTGAAGCTGAGAACTTCAATAGTTGTTGGTCTCACTTGCAAGGAATTAATGCTGGAAGCCAATCCTTCAC

Fln Alignment:

LG0ACA21YH03RM1___RDGLSSRSVPPADQLQLRVxPIHGDLDDEITGLYHKVSQLKY
A9NNB6_______________RDGLSSRSAAPAEQLQLRVxPIYGDLDDEITGLHHKVSQLKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain