SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene51291

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene51291
TGTTGGTTATAAGGCAACTGCTGCTGGTGTCAAGGAGTCAGCAGCAGTTTTCTGGAGAAGAAATTGAAGAATAATCCAGAGTTATCTTATGAGGAAACTGTACAGACAGCAGTCTCTGCACTCCAATCTGTTCTTCAGGAGGATTTTAAGGCTACAGAAATTGAG

Ace file of the UniGene sp_v3.0_unigene51291

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NP38_PICSI	-	-	6.0e-17	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Proteasome subunit alpha type	-	-	1.269e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	8.063e-40	-

Source	Gene names
Sma3	At2g05840; At5g35590; GSVIVT00034058001; K2K18.4; LOC_Os03g08280; OSJNBa0050H14.19; OSJNBb0076N15.5; Os03g0180400; OsI_10259; PAA1; PAA2; PHYPADRAFT_194639; PHYPADRAFT_198665; PHYPADRAFT_214423; PHYPADRAFT_54982; POPTRDRAFT_577208; POPTRDRAFT_717215; PRC1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05840.1	PAA2 20S proteasome subunit PAA2 chr2:2234226-2236053 FORWARD LENGTH=246	1.0e-15	80%
RefSeq	Arabidopsis thaliana	NP_001031340.1	proteasome subunit alpha type-6-B [Arabidopsis thaliana]	1.0e-15	80%
RefSeq	Populus trichocarpa	XP_002308263.1	predicted protein [Populus trichocarpa]	3.0e-17	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNY3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 30 aas, your sequence is shorter than subject: 55 - 138

Fln protein: CWL*GNCCWCQGVSSSFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIE

Protein Length: 56

Fln nts: TGTTGGTTATAAGGCAACTGCTGCTGGTGTCAAGGAGTCAGCAGCAGTTTTCTGGAGAAGAAATTGAAGAATAATCCAGAGTTATCTTATGAGGAAACTGTACAGACAGCAGTCTCTGCACTCCAATCTGTTCTTCAGGAGGATTTTAAGGCTACAGAAATTGAG

Fln Alignment:

EPDB_BX679155___SFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIE
B8LNY3_______________SFLEKKLKNNPELSYEETVQTAVSALQSVLQEDFKATEIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain