UniGene Name: sp_v3.0_unigene50940
Length: 239 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
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>sp_v3.0_unigene50940
T |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | [O] COG0464 ATPases of the AAA+ class | - | - | 5.0e-23 | 67% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 53% |
Sma3 | Cell division cycle protein 48 homolog | - | - | 1.609e-10 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases. | EC:3.4.24.- | - | 1.539e-13 | - |
Sma3 | Microtubule-severing ATPase. | EC:3.6.4.3 | - | 3.09e-13 | - |
Source | Gene names |
---|---|
Sma3 | AAA; AT3G09840; AT5G42270; At1g50250; At3g01610; At3g09840; At3g47060; At3g53230; At3g56690; At5g03340; At5g42270; At5g58870; CAFP; CDC48; CDC48A; CDC48C; CDC48D; CDC48E; CHLREDRAFT_134171; CHLREDRAFT_145283; CHLREDRAFT_24096; CHLREDRAFT_38371; EMB1354; F |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
Sma3 | cytoskeleton | GO:0005856 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | chloroplast thylakoid membrane | GO:0009535 | Cellular Component | 0.0 | - |
Sma3 | thylakoid | GO:0009579 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
Sma3 | flagellum | GO:0019861 | Cellular Component | 0.0 | - |
Sma3 | thylakoid lumen | GO:0031977 | Cellular Component | 0.0 | - |
Sma3 | protein complex | GO:0043234 | Cellular Component | 0.0 | - |
Sma3 | ATP-dependent peptidase activity | GO:0004176 | Molecular Function | 0.0 | - |
Sma3 | metalloendopeptidase activity | GO:0004222 | Molecular Function | 0.0 | - |
Sma3 | serine-type endopeptidase activity | GO:0004252 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | nucleoside-triphosphatase activity | GO:0017111 | Molecular Function | 0.0 | - |
Sma3 | ATPase activity, uncoupled | GO:0042624 | Molecular Function | 0.0 | - |
Sma3 | identical protein binding | GO:0042802 | Molecular Function | 0.0 | - |
Sma3 | proteolysis | GO:0006508 | Biological Process | 0.0 | - |
Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
Sma3 | multicellular organismal development | GO:0007275 | Biological Process | 0.0 | - |
Sma3 | photosystem II repair | GO:0010206 | Biological Process | 0.0 | - |
Sma3 | PSII associated light-harvesting complex II catabolic process | GO:0010304 | Biological Process | 0.0 | - |
Sma3 | protein transport | GO:0015031 | Biological Process | 0.0 | - |
Sma3 | protein catabolic process | GO:0030163 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Sma3 | cell division | GO:0051301 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Peptidase S8/S53, subtilisin/kexin/sedolisin | IPR000209 | - | 0.0 | - |
Sma3 | Peptidase M41 | IPR000642 | - | 0.0 | - |
Sma3 | Peptidase M14, carboxypeptidase A | IPR000834 | - | 0.0 | - |
Sma3 | IPR001984 | - | 0.0 | - | |
Sma3 | CDC48, N-terminal subdomain | IPR003338 | - | 0.0 | - |
Sma3 | AAA+ ATPase domain | IPR003593 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, core | IPR003959 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, conserved site | IPR003960 | - | 0.0 | - |
Sma3 | CDC48, domain 2 | IPR004201 | - | 0.0 | - |
Sma3 | Peptidase, FtsH | IPR005936 | - | 0.0 | - |
Sma3 | 26S proteasome subunit P45 | IPR005937 | - | 0.0 | - |
Sma3 | ATPase, AAA-type, CDC48 | IPR005938 | - | 0.0 | - |
Sma3 | Twin-arginine translocation pathway, signal sequence | IPR006311 | - | 0.0 | - |
Sma3 | Aspartate decarboxylase-like fold | IPR009010 | - | 0.0 | - |
Sma3 | TonB box, conserved site | IPR010916 | - | 0.0 | - |
Sma3 | Peptidase M41, FtsH extracellular | IPR011546 | - | 0.0 | - |
Sma3 | EGF-like region, conserved site | IPR013032 | - | 0.0 | - |
Sma3 | Vps4 oligomerisation, C-terminal | IPR015415 | - | 0.0 | - |
Sma3 | IPR017909 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT3G01610.1 | CDC48C, emb1354 cell division cycle 48C chr3:231787-235057 FORWARD LENGTH=820 | 6.0e-28 | 72% |
RefSeq | Arabidopsis thaliana | NP_186810.2 | cell division cycle 48C protein [Arabidopsis thaliana] | 8.0e-28 | 72% |
RefSeq | Populus trichocarpa | XP_002319947.1 | predicted protein [Populus trichocarpa] | 6.0e-29 | 69% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NWQ8
Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 79 - 398
Fln protein:
L
Protein Length:
80
Fln nts:
T
Fln Alignment:
CL19065Contig1___VIGATNRPDSLDPALRRPGRFDREIFLGVPDENARAEILSVLASGLRLEGSFDYKKVAKCTPGFVGADLAALTREA
A9NWQ8_______________MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain