SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50616

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene50616
CAAGACCACCAGATGTTGAAGAAAGCAGAAAAAATCTTCCAATAATTATGATGGAGCAGGAGATTATGGAGGCTGTCAGTCATCATTCAGTAGTGATTATATGTGGGGAGACTGGATGTGGCAAAACTACCCAAGTTCCACAGTTTCTATTTGAAGCTGGATTTGGTTCAAGGAAGGGCAAAGAAAGAGCAGCAACCATAGGTGTCACTCAGCCCCGCCGTGTCGCAGTTC

Ace file of the UniGene sp_v3.0_unigene50616

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase, putative [Arabidopsis thaliana]	-	-	2.0e-25	71%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%

Source	Gene names
Sma3	At1g33390; F10C21.6; GSVIVT00028045001; MICPUCDRAFT_18184; Os02g0736600; OsI_08853; OsJ_08305; P0487D09.24; PHYPADRAFT_150197; POPTRDRAFT_552479; RCOM_1179650; T16O9.12;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G33390.1	ATFAS4, FAS4 RNA helicase family protein chr1:12099738-12104108 REVERSE LENGTH=1237	2.0e-31	71%
RefSeq	Arabidopsis thaliana	NP_174605.1	putative RNA helicase [Arabidopsis thaliana]	2.0e-31	71%
RefSeq	Populus trichocarpa	XP_002302733.1	predicted protein [Populus trichocarpa]	6.0e-32	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38953

Fln msg: Distance to subject end: 595 aas, your sequence is shorter than subject: 76 - 1168

Fln protein: RPPDVEESRKNLPIIMMEQEIMEAVSHHSVVIICGETGCGKTTQVPQFLFEAGFGSRKGKERAATIGVTQPRRVAV

Protein Length: 77

Fln nts: CAAGACCACCAGATGTTGAAGAAAGCAGAAAAAATCTTCCAATAATTATGATGGAGCAGGAGATTATGGAGGCTGTCAGTCATCATTCAGTAGTGATTATATGTGGGGAGACTGGATGTGGCAAAACTACCCAAGTTCCACAGTTTCTATTTGAAGCTGGATTTGGTTCAAGGAAGGGCAAAGAAAGAGCAGCAACCATAGGTGTCACTCAGCCCCGCCGTGTCGCAGTTC

Fln Alignment:

CL15346Contig1___VEESRKNLPIIMMEQEIMEAVSHHSVVIICGETGCGKTTQVPQFLFEAGFGSRKGKERAATIGVTQPRRVA
Q38953_______________IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGY-TTKGK-----IGCTQPRRVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain