SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50357

Length: 135 nt

UniGene Fasta

>sp_v3.0_unigene50357
TCATTCGGTGTATCAAGCCAAATAGATTGAAACTTCCAGGTGTCTTTGAGCAAGGACTTGTCTTGCAGCAGTTGCGCTGTTGTGGAGTGCTGGAAGTAGTTCGGATATCTCGATCGGGCTATCCCACTCGGATGT

Ace file of the UniGene sp_v3.0_unigene50357

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin 1 n=5 Tax=Arabidopsis RepID=Q9LHE9_ARATH	-	-	4.0e-15	86%
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	86%
Sma3	Myosin	-	-	4.35e-13	-

Source	Gene names
Sma3	AT4g27370; ATM; At1g50360; At3g19960; At4g27370; At5g43900; At5g54280; F14I3.6; F20D22.7; GSVIVT00003146001; GSVIVT00027592001; LOC_Os03g64290; LOC_Os10g34710; MICPUCDRAFT_16046; MICPUCDRAFT_28890; MICPUN_106745; MICPUN_65252; MyoVIIIA1; MyoVIIIA2; OJ1741

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	actin filament-based movement	GO:0030048	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G50360.1	VIIIA, ATVIIIA P-loop containing nucleoside triphosphate hydrolases superfamily protein chr1:18650688-18657106 FORWARD LENGTH=1153	9.0e-19	81%
RefSeq	Arabidopsis thaliana	NP_188630.1	myosin 1 [Arabidopsis thaliana]	3.0e-20	86%
RefSeq	Populus trichocarpa	XP_002337791.1	predicted protein [Populus trichocarpa]	3.0e-19	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0HH46

Fln msg: Distance to subject end: 391 aas, your sequence is shorter than subject: 44 - 456

Fln protein: IRCIKPNRLKLPGVFEQGLVLQQLRCCGVLEVVRISRSGYPTRM

Protein Length: 45

Fln nts: TCATTCGGTGTATCAAGCCAAATAGATTGAAACTTCCAGGTGTCTTTGAGCAAGGACTTGTCTTGCAGCAGTTGCGCTGTTGTGGAGTGCTGGAAGTAGTTCGGATATCTCGATCGGGCTATCCCACTCGGATGT

Fln Alignment:

CL12623Contig1___IRCIKPNRLKLPGVFEQGLVLQQLRCCGVLEVVRISRSGYPTRM
C0HH46_______________IRCIKPNNLQLPAIYEQGLVLQQLKCCGVLEVVRISRSGYPTRM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain