SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50317

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene50317
TGCATATTTACCATCAGGAATGAACAGTCGTTGCATCACATCCATCCGAACCGAATCAATCAATTTGCTCTTGGGAAAACAGATGGAGTTCATGTTATTGAGCCTTCAGAGTAAGAAGGGAAATGGGGTGTTGGACCTCCCCCAGATAATGGAACTGTCGGATCAAATCCAACCCCAAGTAACCAGAGTTCGGAACCACCGTCAAGGTAGTTCAATGGGAACAT

Ace file of the UniGene sp_v3.0_unigene50317

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	49%

Source	Gene names
Sma3	PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_742882; RCOM_0902410;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80490.2	TPR1 TOPLESS-related 1 chr1:30261094-30266446 REVERSE LENGTH=1120	9.0e-12	49%
RefSeq	Arabidopsis thaliana	NP_178164.3	Topless-related protein 1 [Arabidopsis thaliana]	1.0e-11	49%
RefSeq	Populus trichocarpa	XP_002329020.1	predicted protein, partial [Populus trichocarpa]	2.0e-11	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: your sequence is shorter than subject: 70 - 1119

Fln protein: CIFTIRNEQSLHHIHPNRINQFALGKTDGVHVIEPSE*EGKWGVGPPPDNGTVGSNPTPSNQSSEPPSR*

Protein Length: 71

Fln nts: TGCATATTTACCATCAGGAATGAACAGTCGTTGCATCACATCCATCCGAACCGAATCAATCAATTTGCTCTTGGGAAAACAGATGGAGTTCATGTTATTGAGCCTTCAGAGTAAGAAGGGAAATGGGGTGTTGGACCTCCCCCAGATAATGGAACTGTCGGATCAAATCCAACCCCAAGTAACCAGAGTTCGGAACCACCGTCAAGGTAG___TTCAATGGGAACAT

Fln Alignment:

CL12248Contig1___HPNRINQFALGKTDG-VHVIEPSE*EGKWGVGPPPDNGT---VGSNPTPSNQSSEPPSR
Q0WV90-1_____________HPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain