SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50289

Length: 523 nt

UniGene Fasta

>sp_v3.0_unigene50289
TGGAGAATTCGGGGGCACCATTTTCTCCCGTTCAGATGGTACTTGGGAATGCATGTGCAAAATTAAGAACTTAGACAGTGGCAAGGAGTTTGTTGTAGACGAGTTGGGGCAAGATGGTCTATGGAACAAGGTTAGAGAAGTTGGAACAGATAGACAGCTAACTATGGATGAGTTTGAAAGGTCGCTGGGGCTCTCTCCTCTTGTGCAAGAACTCATGCGCAGGGAAAGTGGGGTGGCCCAAGCAGATTGTAACGGAGTACATCATCATGATGCAGAGATTTCAAGCAGCAAAAGGAGAAGCTGGCTGAAAGCCCTAAAATCTGCTGCCTATTCAATGAGGCGGCCTAAAGAGGATCAAAGTAACTATGATTCTGAGAGAAGTAGGCGAAGATCTGGTTCCTTTGATGTCCCTTGGGGGAAGCCTCAGTGGACTAAAGTGCGCCACTATAGGAAACGTTATAAGGAGTTTACAGCTCTTTACATGGGTCAAGAGATTGAAGCCCACGAGGGCTCTATTTGGACG

Ace file of the UniGene sp_v3.0_unigene50289

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAK50098.1\|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb\|AAF35413.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB02376.1\| WD-40 repeat protein-like [Arabidopsis thaliana] gb\|A	-	-	5.0e-32	46%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	48%

Source	Gene names
Sma3	At3g15470; At5g54200; MJK13.13; POPTRDRAFT_1113907; POPTRDRAFT_771849; RCOM_0252870;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein chr3:5216630-5219868 REVERSE LENGTH=883	6.0e-38	46%
RefSeq	Arabidopsis thaliana	NP_566515.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	8.0e-38	46%
RefSeq	Populus trichocarpa	XP_002329147.1	predicted protein [Populus trichocarpa]	6.0e-39	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N1K2

Fln msg: Distance to subject end: 476 aas, your sequence is shorter than subject: 174 - 799

Fln protein: GEFGGTIFSRSDGTWECMCKIKNLDSGKEFVVDELGQDGLWNKVREVGTDRQLTMDEFERSLGLSPLVQELMRRESGVAQADCNGVHHHDAEISSSKRRSWLKALKSAAYSMRRPKEDQSNYDSERSRRRSGSFDVPWGKPQWTKVRHYRKRYKEFTALYMGQEIEAHEGSIWT

Protein Length: 175

Fln nts: TGGAGAATTCGGGGGCACCATTTTCTCCCGTTCAGATGGTACTTGGGAATGCATGTGCAAAATTAAGAACTTAGACAGTGGCAAGGAGTTTGTTGTAGACGAGTTGGGGCAAGATGGTCTATGGAACAAGGTTAGAGAAGTTGGAACAGATAGACAGCTAACTATGGATGAGTTTGAAAGGTCGCTGGGGCTCTCTCCTCTTGTGCAAGAACTCATGCGCAGGGAAAGTGGGGTGGCCCAAGCAGATTGTAACGGAGTACATCATCATGATGCAGAGATTTCAAGCAGCAAAAGGAGAAGCTGGCTGAAAGCCCTAAAATCTGCTGCCTATTCAATGAGGCGGCCTAAAGAGGATCAAAGTAACTATGATTCTGAGAGAAGTAGGCGAAGATCTGGTTCCTTTGATGTCCCTTGGGGGAAGCCTCAGTGGACTAAAGTGCGCCACTATAGGAAACGTTATAAGGAGTTTACAGCTCTTTACATGGGTCAAGAGATTGAAGCCCACGAGGGCTCTATTTGGACG

Fln Alignment:

CL11881Contig1___MCKIKNLDSGKEFVVDELGQDGLWNKVREVGTDRQLTMDEFERSLGLSPLVQELMRR---ESGVAQ---ADCNGVHHHDAEISSSKRR-SWLKALKSAAYSMRRPKE----DQSNYDSERSRRRSGSF-----DVPWGKPQWTKVRHYRKRYKEFTALYMGQEIEAHEGSIWT
B9N1K2_______________VCTIKNLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVGHSPIVQELMRRQIVEDGTRENLDADANG--GIGGGVSKFKKKGSWFRSIKSVANSVTGNKERRSSDERDTGSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGRPSKELSALYKSQEIQAHNGSIWS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain