SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene50223

Length: 473 nt

UniGene Fasta

>sp_v3.0_unigene50223
GCCAATAACGACCAGCGTGGCGGAGGCGCCTGCTCCGTCCCCCGCTGACGTGAACATCACCGCTGTTCTGATAAAGGGTGGGTGCAAGATCTTCGCCGGCATGATCTCCGCCACAGGGGTCATCGAGACCTTTAAGGACGCCGTCCAGGGTGGGCTGACCGTATTCGCTCCTACGGACGCTGCCTTTACGGGTGTCACCAGCAAGTTGCTGAGCAAGATGTCCAGCGATGACAAAGAATCCCTGCTAGAGTTCCACGCGCTGCCCGTGTACAGCCCACTTGGCACCCTCAAGACAACCAATGGCCCCATCAGCACGATGGCGACCAACGGCGCCGGCAAGTACGTAGTGACGGCATCCTCCTCGGGCAACACGGTGATGCTCAATACTCGCATTTGCAAGGCCACGATCAGCGGTACCCTACTGGACGACCAGCCACTTGCGATCTTTACGGTTGATAAGTTGCTGAAGCCCA

Ace file of the UniGene sp_v3.0_unigene50223

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin-like arabinogalactan protein n=3 Tax=Vitis RepID=E3WHD6_9ROSI	-	-	6.0e-33	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Fasciclin-like arabinogalactan protein 10	-	-	1.801e-13	-

Source	Gene names
Sma3	At2g45470; At3g60900; F4L23.2; FLA10; FLA11; FLA12; FLA13; FLA8; GSVIVT00026257001; GSVIVT00033374001; POPTRDRAFT_730906; RCOM_1612500; T4C21.310; VITISV_011425;

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Thr operon leader peptide	IPR011720	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60900.1	FLA10 FASCICLIN-like arabinogalactan-protein 10 chr3:22499573-22500841 REVERSE LENGTH=422	1.0e-37	48%
RefSeq	Arabidopsis thaliana	NP_191649.1	fasciclin-like arabinogalactan protein 10 [Arabidopsis thaliana]	1.0e-37	48%
RefSeq	Populus trichocarpa	XP_002320736.1	predicted protein [Populus trichocarpa]	3.0e-40	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV7

Fln msg: Distance to subject end: 86 aas, your sequence is shorter than subject: 157 - 409

Fln protein: PITTSVAEAPAPSPADVNITAVLIKGGCKIFAGMISATGVIETFKDAVQGGLTVFAPTDAAFTGVTSKLLSKMSSDDKESLLEFHALPVYSPLGTLKTTNGPISTMATNGAGKYVVTASSSGNTVMLNTRICKATISGTLLDDQPLAIFTVDKLLKP

Protein Length: 158

Fln nts: GCCAATAACGACCAGCGTGGCGGAGGCGCCTGCTCCGTCCCCCGCTGACGTGAACATCACCGCTGTTCTGATAAAGGGTGGGTGCAAGATCTTCGCCGGCATGATCTCCGCCACAGGGGTCATCGAGACCTTTAAGGACGCCGTCCAGGGTGGGCTGACCGTATTCGCTCCTACGGACGCTGCCTTTACGGGTGTCACCAGCAAGTTGCTGAGCAAGATGTCCAGCGATGACAAAGAATCCCTGCTAGAGTTCCACGCGCTGCCCGTGTACAGCCCACTTGGCACCCTCAAGACAACCAATGGCCCCATCAGCACGATGGCGACCAACGGCGCCGGCAAGTACGTAGTGACGGCATCCTCCTCGGGCAACACGGTGATGCTCAATACTCGCATTTGCAAGGCCACGATCAGCGGTACCCTACTGGACGACCAGCCACTTGCGATCTTTACGGTTGATAAGTTGCTGAAGCCCA

Fln Alignment:

CL10464Contig1___PITTSVAEAPAPSPADVNITAVLIKGGCKIFAGMISATGVIETFKDAVQGGLTVFAPTDAAFTGVTXXXXXXXXXXXXXXXXEFHALPVYSPLGTLKTTNGPISTMATNGAGKYVVTASSSGNTVMLNTRICKATISGTLLDDQPLAIFTVDKLLKP
B8LLV7_______________PITTNVAEAPAPAPADVNITAVLIKGGCRIFATMISTTGVLKTFEDAVQGGLTVFCPTDAAFTGATNKLLKKLTSDDQVSVLEFHGLPIYSPLGTLKTTNGPIRTMASPAARKYVLTVSSSGDTVILNTGVSKATISGTLLDDQPLAIFTVNKLLEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain