SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49447

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene49447
TACAGTTGATAACTATGAGGACAAACGATATTCTATGGTTAGTGTACGGTGCAGGGATAGACCAAAGCTTCTTTTCGATACAGTTTGTACATTAACAGACATGCAGTATGTGGTTTTTCATGCATCCGCAGATTCTCAAGACACT

Ace file of the UniGene sp_v3.0_unigene49447

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ACT domain-containing protein n=7 Tax=Brassicaceae RepID=F4I0I7_ARATH	-	-	4.0e-14	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Amino acid binding protein, putative	-	-	2.588e-17	-

Source	Gene names
Sma3	ACR1; ACR3; ACR4; ACR5; AT1G76990; AT2G03730; At1g69040; At1g69040/F4N2_2; At1g76990; At2g03730; At5g65890; BoB028L01.070; BoB029L16.10; F22K20.9; F6H11.30; GSVIVT00001021001; GSVIVT00006985001; GSVIVT00010596001; GSVIVT00012213001; GSVIVT00014345001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	[protein-PII] uridylyltransferase activity	GO:0008773	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	nitrogen compound metabolic process	GO:0006807	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	0.0	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69040.2	ACR4 ACT domain repeat 4 chr1:25957843-25960079 FORWARD LENGTH=455	1.0e-19	76%
RefSeq	Arabidopsis thaliana	NP_177067.1	ACT domain-containing protein [Arabidopsis thaliana]	2.0e-19	76%
RefSeq	Populus trichocarpa	XP_002302203.1	predicted protein [Populus trichocarpa]	5.0e-16	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NND6

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 48 - 466

Fln protein: TVDNYEDKRYSMVSVRCRDRPKLLFDTVCTLTDMQYVVFHASADSQDT

Protein Length: 49

Fln nts: TACAGTTGATAACTATGAGGACAAACGATATTCTATGGTTAGTGTACGGTGCAGGGATAGACCAAAGCTTCTTTTCGATACAGTTTGTACATTAACAGACATGCAGTATGTGGTTTTTCATGCATCCGCAGATTCTCAAGACACT

Fln Alignment:

CL21956Contig1___TVDNYEDKRYSMVSVRCRDRPKLLFDTVCTLTDMQYVVFHAS
A9NND6_______________TVENCNEKGYSVVNIQCRDRPKLLFDTVCTLTDMQYVVFHAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain