SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49130

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene49130
TGCAGGTTTTAAGTGTTTTTAGAGATCAAGGATTGCTTATATCTCTTCTCTTGGGTCTTTCAGCATTCTTTTCTATGGCCGAGATTTCCATAATGACACTGTGGCCCTGGAAGGTTCAGGAATTAGCAGAAAAAGAACCAGAGGATGGAGTTTTCCGATTGCTTCGTCAAGATGTCACTCGATTTCTTACAACGATTCTTATTGGCACAAC

Ace file of the UniGene sp_v3.0_unigene49130

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBS domain and transporter associated domain-containing protein n=2 Tax=Arabidopsis RepID=Q9LK65_ARATH	-	-	2.0e-19	71%
FL-Next	sp=Putative DUF21 domain-containing protein At3g13070, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%

Source	Gene names
Sma3	At1g55930; At3g13070; GSVIVT00027195001; HO2c; LOC_Os03g39640; OSJNBb0056O10.5; OSTLU_1568; Os03g0593200; OsI_12456; OsJ_11614; Ot11g01110; PHYPADRAFT_138470; PHYPADRAFT_201957; PHYPADRAFT_228725; POPTRDRAFT_753243; RCOM_0423930; VITISV_018001;

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Transporter-associated domain	IPR005170	-	-
Sma3	Haem oxygenase-like, multi-helical	IPR016084	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Domain of unknown function DUF2040	IPR018612	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein chr3:4191511-4195112 REVERSE LENGTH=661	4.0e-25	79%
RefSeq	Arabidopsis thaliana	NP_187914.1	CBS domain and transporter associated domain-containing protein [Arabidopsis thaliana]	5.0e-25	79%
RefSeq	Populus trichocarpa	XP_002300361.1	predicted protein [Populus trichocarpa]	5.0e-24	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LK65

Fln msg: Distance to subject end: 439 aas, your sequence is shorter than subject: 69 - 661

Fln protein: QVLSVFRDQGLLISLLLGLSAFFSMAEISIMTLWPWKVQELAEKEPEDGVFRLLRQDVTRFLTTILIGT

Protein Length: 70

Fln nts: TGCAGGTTTTAAGTGTTTTTAGAGATCAAGGATTGCTTATATCTCTTCTCTTGGGTCTTTCAGCATTCTTTTCTATGGCCGAGATTTCCATAATGACACTGTGGCCCTGGAAGGTTCAGGAATTAGCAGAAAAAGAACCAGAGGATGGAGTTTTCCGATTGCTTCGTCAAGATGTCACTCGATTTCTTACAACGATTCTTATTGGCACAAC

Fln Alignment:

CL18182Contig1___QVLSVFRDQXXXXXXXXXXXAFFSMAEISIMTLWPWKVQELAEKEPEDGVFRLLRQDVTRFLTTILIGT
Q9LK65_______________QVLTVLREQGLILAALLSLSAFFSMAETSITTLWPWKVRELAEKEPENGVFRMLRSDVTRFLTTILIGT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain