SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene49119

Length: 1357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene49119 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Atrophin-1 multi-domain protein	-	-	2.0e-19	26%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	25%
Sma3	Extensin	-	-	5.604e-35	-

Source	Gene names
Sma3	APTR-1; AT4g08380; AT4g08410; AcExt1; At1g76930; At2g15880; At2g43150; At3g28550; At3g54580; At4g08380; At4g08410; ENOD2; EXT1; EXT4; Enod2; Ext1.2A; Ext1.2B; Ext26G; F22K20.3; HRGP; LlPRP2; Os11g0657400; OsJ_34704; POPTRDRAFT_587814; POPTRDRAFT_664707; P

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Adhesive plaque protein	IPR002964	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Atrophin-1	IPR017993	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BWL5

Fln msg:

Fln protein: MCSHEGGICRSEESEALEEALVSVLEGICKCKEIRRMEICTPGEDICEQGEDILSAWVEICTPGEEICEPGEDILSAWVELCTPGEDILSAWVEICTPGEEICEPGEDILSAWVEICTPGEEICEQGKDILSAWEEELLRAWVEICV*EEDILSAWEEESLRA*AEICAQEEDIVSAWEEESLRAWVEICA*

Protein Length: 193

Fln nts: AGGAGAAAAGCAATTAGACTGCTCCAAATTATTTCAGTCTCGATATGCCAATTTATTTTATCATGCAGAAGGAAAGATATCAACAGCAATCGACCGTTACATTCCCTTTAAATTCCCTGCGTTTCAGTCCATCCTTTAATGCTAAAATGACAGACTGGCGATCGCTTGCAAGTTATTTGCTAAAGGCGACGGACTTCAAGACTTGAAACACACTAATAAATTCAAACGGAACATTAATTGATCCAACCCGACCAATACAGATGACGAAATAAACCATTGCATGCATATTGTACCATCGTACAATATCGATTATTCATAAAAACAGCTTTATAATATCGTTCCTTTATTAGTAAGCAGGATGAGGAGGGGGAGGAA_-_ATGTGTAGTCATGAGGGGGGGATTTGTCGATCGGAGGAGAGTGAAGCACTGGAGGAGGCGTTAGTATCGGTTTTGGAGGGGATTTGTAAATGTAAGGAGATTCGAAGAATGGAGATTTGTACTCCGGGGGAGGATATTTGTGAACAGGGGGAGGATATTCTATCGGCTTGGGTGGAGATTTGTACTCCGGGGGAGGAAATTTGTGAACCGGGGGAGGATATTCTATCGGCTTGGGTGGAGCTTTGTACTCCGGGGGAGGATATTCTATCGGCTTGGGTGGAGATTTGTACTCCGGGGGAGGAAATTTGTGAACCGGGGGAGGATATTCTATCGGCTTGGGTGGAGATTTGTACTCCGGGGGAGGAAATTTGTGAACAGGGGAAGGATATACTATCGGCTTGGGAGGAGGAATTACTACGTGCGTGGGTGGAGATTTGTGTATAGGAGGAGGATATTCTATCGGCTTGGGAGGAGGAATCACTACGTGCGTGAGCGGAGATTTGTGCCCAGGAGGAGGATATTGTATCGGCCTGGGAGGAGGAATCACTACGTGCGTGGGTGGAGATTTGTGCATAG___GAGGAGGATATACCATCGGCTTAGGTGGAGATTTATGCACTTCTTCATGATGATGATGGTGATGTTTGTGCACGTGATGATGAAATATGTGTTCGGGAGGAGGATATTTGTGAAGTGGTGGAGGAAGCACTATTGGCTGAGGAGGAGATTTGTGGAAAGGAGGAAATGATATGGGCGCGGGAGGAGAATCTTTACGCACTGGAGGATTGAATGTAATGGGCGCGGCCGAAGATTTGTGCACCGGAGGAGGAAACAGCGTGGGCTTGGGAGGGGATTCCGAAACTGGAGACGGTGGAGTGTAAGTAGCGCCACAGTTATATGCCTGGAGGCATATGACTGTGAAAACGGCGAGCAGGAAGCCGTAATGAGTTCGTGCCATGTTTCGCAACACGAGGACAGATAGACA

Fln Alignment:

CL18041Contig1___RRMEICTPGEDICEQGEDILSAWVEICTPGEEICEPGEDILSAWVELCTPGEDILSAWVEICTPGEEICEPGEDILSAWVEICTPGEEICEQGKDILSAWEEELLRAWVEICV*EEDILSAWEEESLRA*AEICAQEEDIVSAWEE
A5BWL5_______________RGYELCERGYELCERWYELCEKWYELCEMWYELCGMRYELCERGYELYERMYELCEIWYEHCERGYEHCEIMYEHYEMGYVHCERGYEHCKKGYEHCKK-EYEHCERWYELCEMGYKLCKKWYELCERW-YELCERVYELYERWYE

SSRs (tot: 1)

Start position	End position	Sequence	Length
349	360	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain