SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48912

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene48912
CAAATAACAAAACTTTGGCAGACGAGAGTTATTCAGGCTGCTGATACTGATATTTCTGCCCTTGTTGAAATTGAGAAAAATAGTCGTCATCGATTTGAGTTCTTCATGGGCCTGGTTAGTGATGAGCCTATCTGTGCTCGGACTGCTTGGGCTTATGCAAAATCTGGAGGGCAAATTTCACATGCTTTGTCAGTTTACAGCTGTGAGCTGCGCCAACCAAATAATGTTAAGGTAATCTTCGACTTTTT

Ace file of the UniGene sp_v3.0_unigene48912

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methionine S-methyltransferase n=2 Tax=Hordeum vulgare RepID=MMT1_HORVU	-	-	9.0e-34	81%
FL-Next	sp=Methionine S-methyltransferase; Hordeum vulgare (Barley).	-	-	0.0	81%
Sma3	Methionine S-methyltransferase	-	-	7.124e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Methionine S-methyltransferase.	EC:2.1.1.12	-	7.58e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Selenocompound metabolism	00450		7.58e-26	%

Source	Gene names
Sma3	At5g49810; GSVIVT00035361001; K21G20.2; MMT; MMT1; MtrDRAFT_AC140551g25v2; OSJNBb0035J08.4; Os05g0105000; OsI_18110; OsJ_16807; P0668H12.19; PHYPADRAFT_122377; PHYPADRAFT_164756; POPTRDRAFT_596793; RCOM_0825000; VITISV_013862;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	transferase activity, transferring nitrogenous groups	GO:0016769	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	methionine S-methyltransferase activity	GO:0030732	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	S-adenosylmethionine metabolic process	GO:0046500	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49810.1	MMT methionine S-methyltransferase chr5:20239418-20246046 FORWARD LENGTH=1071	8.0e-40	75%
RefSeq	Arabidopsis thaliana	NP_199792.1	methionine S-methyltransferase [Arabidopsis thaliana]	1.0e-39	75%
RefSeq	Populus trichocarpa	XP_002328809.1	methionine s-methyltransferase [Populus trichocarpa]	2.0e-37	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9MBC2

Fln msg: Distance to subject end: 706 aas, your sequence is shorter than subject: 82 - 1088

Fln protein: QITKLWQTRVIQAADTDISALVEIEKNSRHRFEFFMGLVSDEPICARTAWAYAKSGGQISHALSVYSCELRQPNNVKVIFDF

Protein Length: 83

Fln nts: CAAATAACAAAACTTTGGCAGACGAGAGTTATTCAGGCTGCTGATACTGATATTTCTGCCCTTGTTGAAATTGAGAAAAATAGTCGTCATCGATTTGAGTTCTTCATGGGCCTGGTTAGTGATGAGCCTATCTGTGCTCGGACTGCTTGGGCTTATGCAAAATCTGGAGGGCAAATTTCACATGCTTTGTCAGTTTACAGCTGTGAGCTGCGCCAACCAAATAATGTTAAGGTAATCTTCGACTTTTT

Fln Alignment:

CL15951Contig1___QITKLWQTRVIQAADTDISALVEIEKNSRHRFEFFMGLVSDEPICARTAWAYAKSGGQISHALSVYSCELRQPNNVKVIFDF
Q9MBC2_______________RINKLWQTKIMQAADTDISALVEIEKNSRHRFEFFMDLVGDQPVCARTAWAYMKSGGRISHALSVYSCQLRQPNQVKKIFEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain