UniGene Name: sp_v3.0_unigene48659
Length: 121 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene48659
C |
Ace file of the UniGene sp_v3.0_unigene48659 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Inward-rectifying K+ channel n=2 Tax=Eucalyptus camaldulensis RepID=Q93X00_EUCCA | - | - | 6.0e-12 | 89% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 78% |
Sma3 | Potassium channel | - | - | 6.226e-13 | - |
Source | Gene names |
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Sma3 | AKT1; AKT2; AKT3; AT2G26650; At2g26650; At4g18290; At4g22200; At5g46240; DKT1; EcKT1-1; EcKT1-2; F18A8.2; GSVIVT00008671001; GSVIVT00016836001; GSVIVT00026473001; GSVIVT00032550001; GSVIVT00032597001; K2; KAT1; KAT2; KPe1; KST1; KZM2; LKT1; LOC_Os03g28120 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
Sma3 | ion channel activity | GO:0005216 | Molecular Function | 0.0 | - |
Sma3 | inward rectifier potassium channel activity | GO:0005242 | Molecular Function | 0.0 | - |
Sma3 | voltage-gated potassium channel activity | GO:0005249 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | potassium ion binding | GO:0030955 | Molecular Function | 0.0 | - |
Sma3 | ion transport | GO:0006811 | Biological Process | 0.0 | - |
Sma3 | potassium ion transport | GO:0006813 | Biological Process | 0.0 | - |
Sma3 | circadian rhythm | GO:0007623 | Biological Process | 0.0 | - |
Sma3 | response to high light intensity | GO:0009644 | Biological Process | 0.0 | - |
Sma3 | response to salt stress | GO:0009651 | Biological Process | 0.0 | - |
Sma3 | response to abscisic acid stimulus | GO:0009737 | Biological Process | 0.0 | - |
Sma3 | stomatal movement | GO:0010118 | Biological Process | 0.0 | - |
Sma3 | regulation of membrane potential | GO:0042391 | Biological Process | 0.0 | - |
Sma3 | root hair elongation | GO:0048767 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Cyclic nucleotide-binding domain | IPR000595 | - | 0.0 | - |
Sma3 | Aminoacyl-tRNA synthetase, class I, conserved site | IPR001412 | - | 0.0 | - |
Sma3 | Ankyrin repeat | IPR002110 | - | 0.0 | - |
Sma3 | Potassium channel, voltage-dependent, EAG/ELK/ERG | IPR003938 | - | 0.0 | - |
Sma3 | Ion transport | IPR005821 | - | 0.0 | - |
Sma3 | Ion transport 2 | IPR013099 | - | 0.0 | - |
Sma3 | RmlC-like jelly roll fold | IPR014710 | - | 0.0 | - |
Sma3 | Cyclic nucleotide-binding, conserved site | IPR018488 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT2G26650.1 | AKT1, ATAKT1, KT1 K+ transporter 1 chr2:11331965-11336444 REVERSE LENGTH=857 | 1.0e-15 | 84% |
RefSeq | Arabidopsis thaliana | NP_180233.1 | Potassium channel AKT1 [Arabidopsis thaliana] | 1.0e-15 | 84% |
RefSeq | Populus trichocarpa | XP_002332383.1 | predicted protein [Populus trichocarpa] | 3.0e-16 | 86% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LPV4
Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 39 - 659
Fln protein:
R
Protein Length:
40
Fln nts:
C
Fln Alignment:
CL13101Contig1___REMIFDIVFMLFNLGLTAYLIGNMTNLIVHGTSRTMKF
B8LPV4_______________REMIFIIFYVFFNLGLTAYLIGNMTNLVVQGTSRTMQF
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain