SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene48269

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene48269
CACTTTTGTTCCTTCTCAGGTCCTCTTATGACTCACAGTATGTGGTACTATCAAATCTGGCAACATTTGTTGCAGCAATGCCCTCCTTATTTGAGCCATTCTTTGAAGATTTCTTTGTTCAATCTTCTGATACATACCATATGCGAGCAATCAAGCTGGAGATCTTATCTCTCATTGCAACCGAATCATCTATTCATACAATATTGCTAGAGTTTCAGGACTATATTAGAGATCCAGATAGAAAGTTTGCCGCAGATGCAGTCTCTGCAATTGGA

Ace file of the UniGene sp_v3.0_unigene48269

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AP3-complex beta-3A adaptin subunit [Arabidopsis thaliana]	-	-	2.0e-26	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	At3g55480; GSVIVT00018474001; Os01g0973300; OsI_05405; OsJ_04940; P0518C01.41; P0698H10.15; POPTRDRAFT_724688; RCOM_0001270; T22E16.140;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	endocytosis	GO:0006897	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-3, beta subunit	IPR017108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55480.2	" PAT2 protein affected trafﬁcking 2 chr3:20566372-20571171 REVERSE LENGTH=1115"	2.0e-32	67%
RefSeq	Arabidopsis thaliana	NP_567022.1	AP3-complex subunit beta-A [Arabidopsis thaliana]	3.0e-32	67%
RefSeq	Populus trichocarpa	XP_002315219.1	predicted protein [Populus trichocarpa]	5.0e-35	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg: Distance to subject end: 525 aas, your sequence is shorter than subject: 91 - 903

Fln protein: LLFLLRSSYDSQYVVLSNLATFVAAMPSLFEPFFEDFFVQSSDTYHMRAIKLEILSLIATESSIHTILLEFQDYIRDPDRKFAADAVSAIG

Protein Length: 92

Fln nts: CACTTTTGTTCCTTCTCAGGTCCTCTTATGACTCACAGTATGTGGTACTATCAAATCTGGCAACATTTGTTGCAGCAATGCCCTCCTTATTTGAGCCATTCTTTGAAGATTTCTTTGTTCAATCTTCTGATACATACCATATGCGAGCAATCAAGCTGGAGATCTTATCTCTCATTGCAACCGAATCATCTATTCATACAATATTGCTAGAGTTTCAGGACTATATTAGAGATCCAGATAGAAAGTTTGCCGCAGATGCAGTCTCTGCAATTGGA

Fln Alignment:

CL8023Contig1___LLFLLRSSYDSQYVVLSNLATFVAAMPSLFEPFFEDFFVQSSDTYHMRAIKLEILSLIATESSIHTILLEFQDYIRDPDRKFAADAVSAIG
B8LNI5_______________LVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain