SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47859

Length: 819 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene47859

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transketolase [Oryza sativa Japonica Group]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	TK	-	-	4.965e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transketolase.	EC:2.2.1.1	-	2.862e-37	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	2.862e-37	%
Sma3	Carbon fixation in photosynthetic organisms	00710	2.862e-37	%
Sma3	Biosynthesis of phenylpropanoids	01061	2.862e-37	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.862e-37	%
Sma3	Biosynthesis of plant hormones	01070	2.862e-37	%
Sma3	Metabolic pathways	01100	2.862e-37	%
Sma3	Biosynthesis of secondary metabolites	01110	2.862e-37	%

Source	Gene names
Sma3	134P10.11; AT3G60750; At2g45290; At3g60750; CHLREDRAFT_141319; GSVIVT00018168001; GSVIVT00026404001; GSVIVT00038435001; MICPUCDRAFT_34943; MICPUN_104852; OSIGBa0139I12.3; OSJNBa0072D08.7; OSTLU_16284; Os04g0266900; Os06g0133800; OsI_15126; OsI_21507; OsJ_

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	transketolase activity	GO:0004802	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	pentose-phosphate shunt, oxidative branch	GO:0009051	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, bacterial-like	IPR005478	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60750.1	Transketolase chr3:22454004-22456824 FORWARD LENGTH=741	49%
RefSeq	Arabidopsis thaliana	NP_001190145.1	Transketolase [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002315311.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ72

Fln msg: Distance to subject end: 281 aas, your sequence is shorter than subject: 273 - 751

Fln protein: VTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHGIFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKCPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLTRIAKVIPGIIGGSADLASS

Protein Length: 274

Fln nts: GTTACTACAGGTCCCCTGGGACAAGGAGTCGCGAATGCAGTGGGTTTTGCTCTTGCAGAGAGACATTTAGCAGCACGGTTCAACAAACCTGATGCAGTGATTGTTGATCACCGGACGTTTTGCATTATGGGAGATGGTTGTGCAATGGAGGGAATATCAAATGAGGCAGCTTCTCTTGCGGCACATTGGAAGCTCAACAAGCTCACACTGATCTATGATGACAACCACAATACGATTGATGGAGATACTAGTCTTGCATTTTCTGAAGACATTTCTGGCCGCTTCAGGGCTCTTGGTTGGAATACAGTTACAGTGGATAACATACATGAAAGCATGGAGTCCTTTCATAAAGCACTTGTTTCTGCTTTCAATGAAACTGAGAGGCCTACATTTATTAAGGTAAAGACCCTGATTGGTAAGTTGTCCAAGAAGGAAGGAACAGCCAAAGCTCATCATGGAATATTTGATGATCAAGATGTGAAGCAGATGAGGCAAAAAGTGAAATGGGAAGACAGAGAACCATTCCATGTTATTCCAATGGCCTACCAAGAACTGCAGAAGCGAGCAAAATATGGAGAAAGACTGGAAGAAGAATGGAACACAATGCTTGAAATATATAAACAGAAATGTCCTCTTGAGGCGAAAGAATTCATGACTTTTCTTCAGGGTGGACTTCCTTCTGATTGGGAATCTGCTCTGCCAAGATTCTCGAAACCAGATCCAGTAGATGCAACACGTGGGTATTCTGAAAAGTGCTTGACTCGAATTGCAAAAGTCATACCTGGTATAATAGGAGGAAGTGCTGACCTTGCAAGCTCA

Fln Alignment:

CL1667Contig1___VTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHG-IFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKCPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLTRIAKVIPGIIGGSADLASS
C0PQ72_______________VTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVTTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVDATRQNLGW-PHPPFHVPEEVKSHWSRHAARGASFEAEWSSKLAEHEKKYPEEAAEFKALISGKLPEGWDKALPAYTTESPADATRILSQQCLNALAKVLPGLLGGSADLASS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain