SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47843

Length: 805 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene47843 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nectarin IV [Nicotiana langsdorffii x Nicotiana sanderae]	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Basic 7S globulin 2 small subunit, putative	-	-	2.965e-18	-

Source	Gene names
Sma3	ACI25; At1g03220; At1g03230; EDGP1; F15K9.16; F15K9.17; GSVIVT00019908001; GSVIVT00019909001; GSVIVT00022862001; GSVIVT00023702001; GSVIVT00023703001; GSVIVT00028479001; NEC4; OSJNBb0006J12.10; OSJNBb0006J12.11; OSJNBb0006J12.8; OSJNBb0006J12.9; Os05g0402

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03220.1	Eukaryotic aspartyl protease family protein chr1:787143-788444 FORWARD LENGTH=433	47%
RefSeq	Arabidopsis thaliana	NP_171821.1	aspartyl protease-like protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002308984.1	predicted protein, partial [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain