SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene47522

Length: 1763 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene47522

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase [Prunus persica]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24670.1	Pectin lyase-like superfamily protein chr3:9006205-9008801 REVERSE LENGTH=440	69%
RefSeq	Arabidopsis thaliana	NP_189110.1	pectate lyase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002297822.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg:

Fln protein: MKNQSILSCMLFIGILCIHGGAAAKPFRSLLAHNTREAETANVKNVTAPEEDPESVVEMVQRSIDNSTRKRELAFLSCGTGNPIDDCWRCDPNWESNRQRLADCGIGFGRNALGGKNGRFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFERDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITISNSYFTHHNEVMLLGHSDSYTPDVNMRVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPSAKEVTKRIYGDVNEWKNWNWRSKGDLMLNGAYFTPSGAGASSAYVKAASLPARPSSLVGPLTQTAGVLFCKKGVRC*

Protein Length: 432

Fln nts: CTTGCCATTAGCGAGCTCTTCTGCTTGCAATAATGCTCGCTTTTTCTCCTCGTTCTCATATTTTCGATTGCATTTCATTTCTTGGGAGAGTTTAAAGTTGCAGCATCGCATTTTCTTTTAACACACAATCTTCATCGGAATCCTCTTCATCGGAGTTTTGGGTACTAAG_-_ATGAAGAATCAGAGTATTTTGAGCTGCATGCTCTTCATCGGAATCCTATGTATCCATGGTGGGGCTGCAGCAAAGCCATTTCGATCTCTGCTTGCTCATAATACGAGAGAAGCAGAGACTGCCAATGTCAAGAACGTCACTGCCCCGGAAGAAGATCCAGAGAGCGTAGTAGAAATGGTTCAAAGAAGCATTGACAACAGCACAAGAAAGCGGGAGCTGGCCTTTCTGTCATGCGGTACTGGTAACCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGGAGAGCAACAGACAACGCCTGGCAGACTGCGGCATTGGATTCGGCAGGAATGCTCTTGGAGGTAAAAATGGGAGGTTTTATCTTGTCACGGATCCCAACGATTATGATGCAGTGAATCCAAGACCCGGCACTCTGCGTCACGCCGTGATTCAGACAGAGCCTCTCTGGATCATCTTCGAGAGAGATATGGTCATCCAGCTGAAGGAGGAGCTGATCATGAACAGTTACAAAACAATCGATGGAAGGGGCGTGAATGTGCACATTGCAAACGGGCCCTGTATCACCGTTCAGTATGTGACCAACATCATCATCCATGGCATTCACGTTCATGATTGTAAGCCTGCAGGAAACGCCATGGTGAGGGACTCTCCCACGCATTACGGGTGGAGAACCATCTGCGATGGAGATGGGATCTCCATATTTGGAGGAAGTCACATTTGGGTGGACCATGTCTCCTTGTCCAACTGTGCTGACGGTCTCATCGATGCCATCATGGGTTCCACTGCCATTACCATCTCAAACAGTTATTTCACTCACCACAACGAGGTGATGTTGTTGGGTCATAGTGATAGCTACACTCCCGACGTGAATATGCGGGTGACGATTGCATACAACCATTTTGGAGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCATGGATACTTCCATGTGGTGAACAATGATTACACTCACTGGGAAATGTATGCGATTGGTGGGAGTGCAAACCCCACGATCAACAGTCAAGGGAATAGATTCTTGGCACCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATATACGGGGACGTGAATGAATGGAAGAATTGGAACTGGAGATCGAAGGGAGATCTGATGCTGAACGGCGCATATTTCACGCCATCGGGAGCAGGGGCGTCATCGGCATATGTAAAAGCAGCGAGTCTGCCAGCGAGGCCTTCCAGCCTTGTCGGACCGCTCACCCAAACTGCGGGCGTACTCTTCTGCAAGAAAGGAGTGCGCTGCTAA___CTTGAACTTCTAACCCACTTACCAAGGTGGAGTTCAACTGACTAGTTATTATGGGAATGAAGCTTTTCTCTAATTTGTCTTACGCCATTTCAAAATTTCTGATAGGATGATAATCGACTCCATTTCGGAATGCACTGGAGGCGTAAAAGTTCTTCTTTTATTGTGATGGTAGGTAGGATGTGATCGGCACTCTGTGTAATCATGTTCTGCTGAAACCGATTTTTTCCCATTTTCTCACCACTTGCCTCTGTATTTGGTGTTATGCCCACCTTCTCAAAGCTGAAATAAATTTCCTTGGATC

Fln Alignment:

CL20862Contig1___MKNQSILSCMLFIGILCIHGGAAAKPFRSLLAHNTREAETANVKNVTAPEEDPESVVEMVQRSIDNSTRKRELAFLSCGTGNPIDDCWRCDPNWESNRQRLADCGIGFGRNALGGKNGRFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFERDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITISNSYFTHHNEVMLLGHSDSYTPDVNMRVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPSAKEVTKRIYGDVNEWKNWNWRSKGDLMLNGAYFTPSGAGASSAYVKAASLPARPSSLVGPLTQTAGVLFCKKGVRC
B8LQ36_______________MKKQSILSCMLLIGILCIHSGAAEKPFGSLFAENSREAGLANT---TAVEEDPESVVQMVQRSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRDALGGKHGSFYLVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPQGNAMVRDSPTHYEWRT-SDGDGISIFGGSHVWVDHVSLSNCADGLIDATMGSTAITISNSYFTHHNEVMLLGHSDSHTSDVKMRVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVTKRINQDVGEWKEWNWRSNGDMMLNGAYFTPSGAGESSAYIRASSLPARPSSLVGPLTQNAGVLFCRKGGRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain