SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46591

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene46591
TGAGTTATGCTGCAGGTGCTGATCTAGTAATGAGTTATGCTGCAGGTGCTGGTAGAGCAGGAGGAGGAAGGGGGACGATGGTGATGGCATCTCCAGCATCTACTACTTTAAGGTGGAGGTGGGCCAGAACAATCTTCCCAGCAGCCAGAGGGGGAGGTTCCTTAAGTTGGAAGAAGAGCAGCAATCTCAGGATTTCCAGAAAGCTGTGTTCTCTTACCAGAGCCTTGAATGGTGGACCAATGGAAGAAAGATACGATGTTATTGTTGTTGGAGGGGGCCATGCAGGCTGTGAAGCGGCTCTTGCTTCTGCGCGCATTGGGGCAAAGACACTTCTACTCACTCTAAATCTTGA

Ace file of the UniGene sp_v3.0_unigene46591 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO	-	-	9.0e-13	61%
FL-Next	tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean).	-	-	0.0	61%

Source	Gene names
Sma3	At2g13440; CHLREDRAFT_38547; GIDA1; GSVIVT00006007001; MA4_82I11.48; MBP_81C12.46; MICPUN_80021; OSTLU_40972; Os01g0960300; OsI_05293; OsI_05295; OsJ_04841; Ot06g01160; P0401G10.24; PHYPADRAFT_112486; RCOM_1189230; VITISV_035600;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA wobble uridine modification	GO:0002098	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Glucose-inhibited division protein A	IPR004416	-	-
Sma3	Protein Transporter, Pam16	IPR005341	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13440.1	glucose-inhibited division family A protein chr2:5593270-5598296 REVERSE LENGTH=723	4.0e-13	68%
RefSeq	Arabidopsis thaliana	NP_178974.1	glucose-inhibited division family A protein [Arabidopsis thaliana]	5.0e-13	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RRF2

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 107 - 375

Fln protein: MSYAAGAGRAGGGRGTMVMASPASTTLRWRWARTIFPAARGGGSLSWKKSSNLRISRKLCSLTRALNGGPMEERYDVIVVGGGHAGCEAALASARIGAKTLLLTLNL

Protein Length: 108

Fln nts: TGAGTTATGCTGCAGGTGCTGATCTAGTA_-_ATGAGTTATGCTGCAGGTGCTGGTAGAGCAGGAGGAGGAAGGGGGACGATGGTGATGGCATCTCCAGCATCTACTACTTTAAGGTGGAGGTGGGCCAGAACAATCTTCCCAGCAGCCAGAGGGGGAGGTTCCTTAAGTTGGAAGAAGAGCAGCAATCTCAGGATTTCCAGAAAGCTGTGTTCTCTTACCAGAGCCTTGAATGGTGGACCAATGGAAGAAAGATACGATGTTATTGTTGTTGGAGGGGGCCATGCAGGCTGTGAAGCGGCTCTTGCTTCTGCGCGCATTGGGGCAAAGACACTTCTACTCACTCTAAATCTTGA

Fln Alignment:

CL9624Contig1___SNLRISRKLCSLTRALNGGP-------------MEERYDVIVVGGGHAGCEAALASARIGAKTLLLTLNL
B9RRF2_______________SALRFSRRRISIVSASTSSPEWSCSNRNSSDGTIEERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain