UniGene Name: sp_v3.0_unigene46421
Length: 227 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene46421
G |
Ace file of the UniGene sp_v3.0_unigene46421 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI | - | - | 5.0e-25 | 74% |
FL-Next | sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 74% |
Sma3 | Beta-galactosidase | - | - | 0.0 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Beta-galactosidase. | EC:3.2.1.23 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Galactose metabolism | 00052 | 0.0 | % | |
Sma3 | Other glycan degradation | 00511 | 0.0 | % | |
Sma3 | Glycosaminoglycan degradation | 00531 | 0.0 | % | |
Sma3 | Sphingolipid metabolism | 00600 | 0.0 | % | |
Sma3 | Glycosphingolipid biosynthesis - ganglio series | 00604 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % |
Source | Gene names |
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Sma3 | AT3G13750; AT5G56870; At1g45130; At1g77410; At2g28470; At2g32810; At3g13750; At3g52840; At4g26140; At4g36360; At5g56870; At5g63810; BG1; BGAL1; BGAL10; BGAL12; BGAL16; BGAL2; BGAL3; BGAL4; BGAL5; BGAL8; BGAL9; C7A10.1000; CARSR12; F20B18.250; F23E13.200; |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | beta-galactosidase complex | GO:0009341 | Cellular Component | 0.0 | - |
Sma3 | plant-type cell wall | GO:0009505 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | beta-galactosidase activity | GO:0004565 | Molecular Function | 0.0 | - |
Sma3 | sugar binding | GO:0005529 | Molecular Function | 0.0 | - |
Sma3 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | GO:0016616 | Molecular Function | 0.0 | - |
Sma3 | cation binding | GO:0043169 | Molecular Function | 0.0 | - |
Sma3 | coenzyme binding | GO:0050662 | Molecular Function | 0.0 | - |
Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
Sma3 | coenzyme A metabolic process | GO:0015936 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Peptidase, cysteine peptidase active site | IPR000169 | - | 0.0 | - |
Sma3 | GPCR, rhodopsin-like, 7TM | IPR000276 | - | 0.0 | - |
Sma3 | D-galactoside/L-rhamnose binding SUEL lectin domain | IPR000922 | - | 0.0 | - |
Sma3 | Legume lectin domain | IPR001220 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, family 35 | IPR001944 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, family 2, N-terminal | IPR006104 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, subgroup, catalytic domain | IPR013781 | - | 0.0 | - |
Sma3 | Cytochrome P450, conserved site | IPR017972 | - | 0.0 | - |
Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
Sma3 | Peroxidases heam-ligand binding site | IPR019793 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT2G28470.1 | BGAL8 beta-galactosidase 8 chr2:12169047-12173164 REVERSE LENGTH=852 | 3.0e-27 | 67% |
RefSeq | Arabidopsis thaliana | NP_001189624.1 | beta-galactosidase 8 [Arabidopsis thaliana] | 4.0e-27 | 67% |
RefSeq | Populus trichocarpa | XP_002314274.1 | predicted protein [Populus trichocarpa] | 7.0e-29 | 67% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NUR2
Fln msg: Distance to subject end: 478 aas, your sequence is shorter than subject: 75 - 861
Fln protein:
G
Protein Length:
76
Fln nts:
G
Fln Alignment:
CL7731Contig1___GPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRVNTTSFGKHLEATVYSIGSSLCAAFLSNT
A9NUR2_______________GPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYSPGSGTCAAFLANS
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain