SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46322

Length: 299 nt

UniGene Fasta

>sp_v3.0_unigene46322
ATGTTCTTATAAGTATGCTTTCTTGTGGCTACTTGCCAAATTCAGAGCCATATCTGTCAATGATACTTCATGCATTTCGAGCATCGAAACTTTTAGAACTAAGACGGAAAACACGCATATTTGTTCCCAAGGGACGATGCTTGATGGGGTGCCTTGATGAAAGTAGAACGCTGAAGTATGGTGAAGTGTTTGTTCAAGTTTCTGAGACTCCGGGAAATAAGCAATTCCATGATACTGGGCTTTCTGCATTTGCACAAAATCCCCTGGACTCTAAAATTAGCATTGTTCAGGGGAAAGTA

Ace file of the UniGene sp_v3.0_unigene46322

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY	-	-	2.0e-22	64%
FL-Next	sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	59%
Sma3	RNA-directed RNA polymerase, putative	-	-	8.691e-17	-

Source	Gene names
Sma3	At1g14790; GSVIVT00030600001; GSVIVT00030602001; Os02g0736200; OsI_08849; OsJ_08301; POPTRDRAFT_231683; POPTRDRAFT_564678; POPTRDRAFT_820696; RDR1a; RDR1b; RDR901; RDR902; RDR903; RDRP1; RDRP2; RdRP; SDM1_25t00006; SDM1_32t00003; SDM1_32t00007; SDM1_34t00

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14790.1	RDR1, ATRDRP1 RNA-dependent RNA polymerase 1 chr1:5094317-5097817 REVERSE LENGTH=1107	1.0e-24	57%
RefSeq	Arabidopsis thaliana	NP_172932.1	RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]	1.0e-24	57%
RefSeq	Populus trichocarpa	XP_002311536.1	rna-dependent RNA polymerase [Populus trichocarpa]	2.0e-24	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DXS3

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 99 - 740

Fln protein: VLISMLSCGYLPNSEPYLSMILHAFRASKLLELRRKTRIFVPKGRCLMGCLDESRTLKYGEVFVQVSETPGNKQFHDTGLSAFAQNPLDSKISIVQGKV

Protein Length: 100

Fln nts: ATGTTCTTATAAGTATGCTTTCTTGTGGCTACTTGCCAAATTCAGAGCCATATCTGTCAATGATACTTCATGCATTTCGAGCATCGAAACTTTTAGAACTAAGACGGAAAACACGCATATTTGTTCCCAAGGGACGATGCTTGATGGGGTGCCTTGATGAAAGTAGAACGCTGAAGTATGGTGAAGTGTTTGTTCAAGTTTCTGAGACTCCGGGAAATAAGCAATTCCATGATACTGGGCTTTCTGCATTTGCACAAAATCCCCTGGACTCTAAAATTAGCATTGTTCAGGGGAAAGTA

Fln Alignment:

CL5987Contig1___MLSCGYLPNSEPYLSMILHAFRASKLLELRRKTRIFVPKGRCLMGCLDESRTLKYGEVFVQ-VSETPGNKQFHDTGLSAFAQNP
Q0DXS3_______________LLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSGVNDNDRFTVTGKVVIAKNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain