SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45594

Length: 352 nt

UniGene Fasta

>sp_v3.0_unigene45594
TCTAAAGAAATAAAGGGAAAAAATGTTTCTTACCAACCTGCCAGTGAATATCTTCCCTTGATGGATGAGGTTTGTCAAGCGTTGAAGGAGAGAGCCAAATTCTACAAGGGTGCGAGGGTTGAACATAATAAATATTGTATCACTGTACACTTTCGCTGTGTCAAGGAAGAAATTTGGAATACTCTTGCTGAAGAAGTACGTTGTGTACTATATGAATATCCTGGACTGAGTATGACTCAGGGACGTAAGGTTTTAGAACTCCGTCCATCCATAGAGTGGGACAAGGGAAAAGCACTGGAGTTCCTGTTGAATGCTTTGGGTGATTTTGAAGGTTCCAAGACACTCTTATTTG

Ace file of the UniGene sp_v3.0_unigene45594

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Trehalose-phosphatase 1 n=3 Tax=Physcomitrella patens subsp. patens RepID=A6MIZ3_PHYPA	-	-	7.0e-34	61%
FL-Next	sp=Probable trehalose-phosphate phosphatase C; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Sister of ramosa 3	-	-	2.157e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Trehalose-phosphatase.	EC:3.1.3.12	-	6.466e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		6.466e-19	%

Source	Gene names
Sma3	117M18_9; 80A08_8; AT4G22590; AT4g12430; AT4g22590; AT4g39770; AT5G51460; At1g35910; At1g78090; At2g22190; At4g12430; At4g12430/T1P17.20; At4g22590; At4g39770; At4g39770/T19P19_160; At5g51460; At5g65140; AtTPPA; AtTPPB; F10O5.8; F16L1.6; GSVIVT00004042001

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	trehalose-phosphatase activity	GO:0004805	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22210.1	TPPC Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr1:7841518-7843812 FORWARD LENGTH=320	3.00018e-42	64%
RefSeq	Arabidopsis thaliana	NP_173640.1	haloacid dehalogenase-like hydrolase [Arabidopsis thaliana]	3.00018e-42	64%
RefSeq	Populus trichocarpa	XP_002307388.1	predicted protein [Populus trichocarpa]	9.99995e-41	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: F4I1A6

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 117 - 320

Fln protein: SKEIKGKNVSYQPASEYLPLMDEVCQALKERAKFYKGARVEHNKYCITVHFRCVKEEIWNTLAEEVRCVLYEYPGLSMTQGRKVLELRPSIEWDKGKALEFLLNALGDFEGSKTLLF

Protein Length: 118

Fln nts: TCTAAAGAAATAAAGGGAAAAAATGTTTCTTACCAACCTGCCAGTGAATATCTTCCCTTGATGGATGAGGTTTGTCAAGCGTTGAAGGAGAGAGCCAAATTCTACAAGGGTGCGAGGGTTGAACATAATAAATATTGTATCACTGTACACTTTCGCTGTGTCAAGGAAGAAATTTGGAATACTCTTGCTGAAGAAGTACGTTGTGTACTATATGAATATCCTGGACTGAGTATGACTCAGGGACGTAAGGTTTTAGAACTCCGTCCATCCATAGAGTGGGACAAGGGAAAAGCACTGGAGTTCCTGTTGAATGCTTTGGGTGATTTTGAAGGTTCCAAGACACTCTTATTTG

Fln Alignment:

CL19290Contig1___KNVSYQPASEYLPLMDEVCQALKERAKFYKGARVEHNKYCITVHFRCVKEEIWNTLAEEVRCVLYEYPGLSMTQGRKVLELRPSIEWDKGKALEFLLNALGDFEGSKTL
F4I1A6_______________EEVMFQPASDYLPMIDEVVNVLKEKTKSIPGATVEHNKFCLTVHFRRVDETGWAALAEQVRLVLIDYPKLRLTQGRKVLELRPSIKWDKGKALEFLLNSLGIAESKDVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain