SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45558

Length: 154 nt

UniGene Fasta

>sp_v3.0_unigene45558
TCGAAATAATCCTGATGGCTGTGATTCATGCCCCTTTTGTCTTGTACTCCCTTGTCTGGTAAAGCTTCAGCAGGTCAGCAATCATTTGGAGCTAATCAAACCAAACCCCAAGGATGATTTGGAGAAGCAAAAGAAGGATGAGGCTCTCGCCGCA

Ace file of the UniGene sp_v3.0_unigene45558

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	84%

Source	Gene names
Sma3	CHR912; F11M21.32; GSVIVT00018606001; OJ1037_G10.9; Os05g0247900; OsI_19162; OsJ_17794; POPTRDRAFT_782376; RCOM_1173750; VITISV_012795;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	SEC-C motif	IPR004027	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03750.1	CHR9 switch 2 chr1:937920-941068 FORWARD LENGTH=862	3.0e-23	86%
RefSeq	Arabidopsis thaliana	NP_171871.2	switch 2 [Arabidopsis thaliana]	4.0e-23	86%
RefSeq	Populus trichocarpa	XP_002328055.1	chromatin remodeling complex subunit [Populus trichocarpa]	2.0e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1LS51

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 51 - 870

Fln protein: RNNPDGCDSCPFCLVLPCLVKLQQVSNHLELIKPNPKDDLEKQKKDEALAA

Protein Length: 52

Fln nts: TCGAAATAATCCTGATGGCTGTGATTCATGCCCCTTTTGTCTTGTACTCCCTTGTCTGGTAAAGCTTCAGCAGGTCAGCAATCATTTGGAGCTAATCAAACCAAACCCCAAGGATGATTTGGAGAAGCAAAAGAAGGATGAGGCTCTCGCCGCA

Fln Alignment:

CL18921Contig1___RNNPDGCDSCPFCLVLPCLVKLQQVSNHLELIKPNPKDDLEKQKKDEALAA
I1LS51_______________RDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQNKDAEFAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain