SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44737

Length: 186 nt

UniGene Fasta

>sp_v3.0_unigene44737
CGTTTCTGCCTCTACACAACACCTCTCTCGAAACAACTTTCCTCCAGACTTCATTTTTGGTGTTGGTTCCTCTGCTTACCAGTATGAAGGAGCTGCAGCAGTAGATGGTCGGAAGCCGAGCATCTTTGACACTTTCACTCACAGGGAAGGGACTACTCCGGATGGAACTAATGGAGATGTAGCTGT

Ace file of the UniGene sp_v3.0_unigene44737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	3.0e-12	58%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	0.0	58%
Sma3	Beta-glucosidase, putative	-	-	5.019e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	4.798e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Cyanoamino acid metabolism	00460	4.798e-10	%
Sma3	Starch and sucrose metabolism	00500	4.798e-10	%
Sma3	Phenylpropanoid biosynthesis	00940	4.798e-10	%
Sma3	Biosynthesis of secondary metabolites	01110	4.798e-10	%

Source	Gene names
Sma3	At2g44480; B1168A08.29-1; B1168A08.29-2; GSVIVT00003797001; GSVIVT00003801001; GSVIVT00027994001; GSVIVT00027998001; GmICHG; LI; Li; OSIGBa0135C13.7; OSJNBa0016N23.104-1; OSJNBa0016N23.104-2; OSJNBa0022H21.3; Os08g0509200; Os09g0511600; Os09g0511700; OsI_

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	raucaffricine beta-glucosidase activity	GO:0050247	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44480.1	BGLU17 beta glucosidase 17 chr2:18359780-18363001 FORWARD LENGTH=517	1.0e-14	63%
RefSeq	Arabidopsis thaliana	NP_181976.1	beta glucosidase 17 [Arabidopsis thaliana]	1.0e-14	63%
RefSeq	Populus trichocarpa	XP_002316169.1	predicted protein, partial [Populus trichocarpa]	4.0e-17	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg: Distance to subject end: 434 aas, your sequence is shorter than subject: 61 - 513

Fln protein: VSASTQHLSRNNFPPDFIFGVGSSAYQYEGAAAVDGRKPSIFDTFTHREGTTPDGTNGDVA

Protein Length: 62

Fln nts: CGTTTCTGCCTCTACACAACACCTCTCTCGAAACAACTTTCCTCCAGACTTCATTTTTGGTGTTGGTTCCTCTGCTTACCAGTATGAAGGAGCTGCAGCAGTAGATGGTCGGAAGCCGAGCATCTTTGACACTTTCACTCACAGGGAAGGGACTACTCCGGATGGAACTAATGGAGATGTAGCTGT

Fln Alignment:

CL9256Contig1___STQHLSRNNFPPDFIFGVGSSAYQYEGAAAVDGRKPSIFDTFTHREGTTPDGTNGDVA
Q9ZT64_______________TTARLDRNNFPSDFMFGTASSAYQYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain