SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44204

Length: 994 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene44204

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin-like arabinogalactan protein 13 n=1 Tax=Gossypium hirsutum RepID=A9XTL8_GOSHI	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Fasciclin-like arabinogalactan protein 10	-	-	4.166e-12	-

Source	Gene names
Sma3	At2g45470; At3g12660; At3g60900; At4g12730; At5g55730; F4L23.2; FLA; FLA1; FLA10; FLA11; FLA12; FLA13; FLA14; FLA19; FLA2; FLA8; GSVIVT00025203001; GSVIVT00026257001; GSVIVT00029095001; GSVIVT00032343001; GSVIVT00033374001; LOC_Os03g03600; MBK21.3; MDF20.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Thr operon leader peptide	IPR011720	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45470.1	FLA8, AGP8 FASCICLIN-like arabinogalactan protein 8 chr2:18742797-18744059 REVERSE LENGTH=420	60%
RefSeq	Arabidopsis thaliana	NP_566043.1	FASCICLIN-like arabinogalactan protein 8 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002320736.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR3

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 322 - 409

Fln protein: MKRAFGFHLKMKVKVLVVWLLSLLFCAGNADNITEILNEFSDYSAFNSYLPQTKLADDINCRTTITVLALNNGAMSAVTSKRRLGLSVMKKVLSLHVLLDYFDGQKLHHISNDTLLSTTLYQTSGNAVGQSGFLNITDLKGGKVGFGTATPGGKLDSMFVKSVKEDPYNMSVLEISSAIMPSDLPAPAPSPNDLNITALLEKAGCNIFVHMITATGVTKTYQDAVANGGLTVFAPADGAFTGPVMTKLKKLSSAQQVSILEYHALPLYNPLGTLKTTSAPITTLATNGASKYALSVSSAGDTVTLNTGLGNSTIATTLLDDQ

Protein Length: 323

Fln nts: GGAACAATAGCAGGCGTGGTGGATCG_-_ATGAAGCGGGCGTTTGGGTTCCATTTGAAAATGAAGGTGAAGGTGTTGGTAGTGTGGTTGTTAAGCTTGTTGTTTTGTGCGGGGAATGCAGATAACATAACAGAGATTTTGAATGAGTTTTCAGATTACAGCGCCTTCAATAGCTATCTCCCTCAGACGAAGCTGGCGGATGACATAAACTGTAGGACGACTATCACAGTTCTGGCGTTGAATAACGGAGCCATGTCGGCTGTAACCAGTAAGCGGCGGTTGGGTTTGTCTGTAATGAAAAAGGTTCTGAGTTTGCATGTGTTGTTAGACTACTTTGACGGACAAAAGCTCCACCACATCTCCAACGACACTCTGCTCTCTACCACACTGTACCAGACTAGCGGAAATGCAGTTGGTCAAAGCGGATTCCTCAACATAACAGATCTCAAGGGCGGTAAAGTGGGCTTTGGAACTGCGACCCCCGGAGGTAAGCTGGATTCCATGTTTGTAAAGTCCGTCAAGGAAGATCCCTACAATATGTCCGTTTTGGAGATCAGCAGTGCGATCATGCCCTCAGATTTGCCGGCGCCGGCGCCATCTCCTAATGATCTCAACATCACCGCCCTGCTGGAGAAGGCCGGCTGCAACATCTTCGTCCACATGATCACCGCCACCGGAGTTACCAAGACTTATCAAGACGCTGTGGCTAATGGGGGTTTGACGGTGTTTGCTCCAGCGGATGGAGCTTTCACTGGACCGGTAATGACAAAGTTGAAGAAACTCTCGAGCGCTCAGCAGGTTTCCATCCTTGAATACCACGCCCTGCCCCTATACAACCCCTTGGGGACGCTCAAGACAACCAGCGCTCCCATCACTACTCTGGCCACCAACGGAGCTTCCAAGTATGCATTATCAGTGTCCTCTGCTGGTGATACCGTCACACTCAATACTGGACTAGGCAACAGTACTATAGCGACGACTCTGTTGGACGACCAGCC

Fln Alignment:

CL2303Contig1___CAGNADNITEILNEFSDYSAFNSYLPQTKLADDINCRTTITVLALNNGAMSAVTSKRRLGLSVMKKVLSLHVLLDYFDGQKLHHISNDTLLSTTLYQTSGNAVGQSGFLNITDLKGGKVGFGTATPGGKLDSMFVKSVKEDPYNMSVLEISSAIMPSDLPAPAPSPNDLNITALLEKAGCNIFVHMITATGVTKTYQDAVANGGLTVFAPADGAFTGPVMTKLKKLSSAQQVSILEYHALPLYNPLGTLKTTSAPITTLATNGASKYALSVSSAGDTVTLNTGLGNSTIATTLLDDQ
A9NVR3_______________CSANAFNITKILAKYPEYSKFNHDLSQTKLADEINSRQTITVLALSNSQMASLSG---LDLASLKRVLSLHVVLDFFDAKKLHEITNGTTLSTTLYQTTGNAPGNTGFINITDLKAGKVGFGPAAHGAKLDATYVKSVKQEGYNISVIEVSKPITTNVAEAPAPAPADVNITAVLIKGGCRIFATMISTTGVLKTFEDAV-QGGLTVFCPTDAAFTGATNKLLKKLTSDDQVSVLEFHGLPIYSPLGTLKTTNGPIRTMASPAARKYVLTVSSSGDTVILNTGVSKATISGTLLDDQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain