SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44200

Length: 925 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene44200

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	TIR/NBS	-	-	9.26e-06	-

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 307 - 495

Fln protein: WGFRNLENKCLVEVNSENQIRMHDHLRDMGREIAEASSPRRLWRSTGKIDDLLQQLSAIDEVHGIKSTDHYGLNSVMPWCQRSSELFSHSFMKFCNKQYPFHGSGICMRNLQLLHSRGVLVKHILTKVQFRNLVWLRWDKCPYSSLHSSISYLKNLRVLQVAGSKLKTLWKKESQAPLQLRELQIKAPLSSIPKSIGKLTQLQRIVIFPYDGKVNVTQLPEEFCFLQSLKALVLKDFSEMKSLPECFGKLSSLHQIDLSRCSSLKSLPDSLGDLSSLQHINLSKCSGLERLPDSLGDLSSLHHINLS

Protein Length: 308

Fln nts: TGTGGGGATTTCGAAATCTAGAAAACAAATGCCTCGTAGAGGTGAATAGTGAAAACCAAATAAGAATGCACGATCACCTGCGAGACATGGGAAGAGAGATTGCCGAAGCTTCATCGCCACGTCGTCTCTGGCGTTCTACAGGAAAAATTGATGATCTCTTGCAACAATTGTCCGCAATAGACGAAGTGCACGGAATTAAATCAACTGATCATTACGGCTTGAACTCAGTAATGCCTTGGTGCCAAAGAAGTAGCGAACTGTTTTCGCACAGTTTTATGAAGTTTTGCAATAAGCAGTATCCTTTTCATGGTAGTGGTATTTGTATGAGGAATTTGCAACTTCTTCATTCTAGAGGTGTTCTTGTGAAGCACATTTTGACAAAGGTGCAGTTTCGAAATCTCGTATGGCTGCGCTGGGACAAATGTCCCTACTCTTCGCTGCATTCGTCCATTTCGTACTTGAAGAACTTAAGGGTTCTACAAGTGGCAGGGAGTAAATTAAAAACATTGTGGAAAAAGGAATCACAGGCACCTTTACAGTTGCGGGAGTTGCAAATTAAAGCTCCCCTCTCAAGCATTCCAAAGTCTATAGGGAAGCTGACGCAGCTACAACGGATCGTGATTTTTCCTTATGACGGGAAGGTCAATGTCACACAATTGCCAGAAGAATTTTGCTTTCTGCAATCATTAAAGGCCTTGGTGTTGAAGGACTTTTCAGAAATGAAATCACTCCCGGAGTGCTTTGGTAAGTTAAGCAGCCTACACCAAATCGACCTGTCTCGGTGCTCCAGTTTGAAAAGTCTGCCAGATTCGCTTGGTGATTTAAGCAGCCTCCAGCACATCAACCTGTCTAAGTGCAGCGGTCTAGAGAGACTGCCAGATTCGCTTGGTGATTTAAGCAGCCTCCACCACATCAACCTGTCTAA

Fln Alignment:

CL2238Contig1___GFRNLENKCLVEVNSENQIRMHDHLRDMGREIAEASSPRRLWRSTGKIDDLLQQLS--AIDEVHGIKST--DHYGLNSVMPWCQRSSELFSHSFMKFCNKQYPFHGSGICMRNLQLLHSRGVLVKHILTKVQFRNLVWLRWDKCPYSSLHSSISYLKNLRVLQVAGSKLKTLWKKESQAP----LQLRELQIKAPLSSIPKSIGKLTQLQRIVIFPY-DGKVNVTQLPEEFCFLQSLKALVLKDFSEMKSLPECFGKLSSLHQIDLSRCXXXXXXXXXXXXXXXXQHINLSKCSGLERLPDSLGDLSSLHHINL
A9NW11_______________GLQTLENRCLLEVDIENNIDMHDHLRDFGKAVADASLPRRLLYSTA-IKDMLEQLSNEQVSTVRGIRVVLGDYY------------DDVYASGGMDTLFDAL----DGIDRRTLELVDTDENAILACILRKPVPSLIWLRWNKCPNLSLPWWIP-MGRLRVLQVYGSELKTLWEDESQVPWQVPLQLRELEINAPLSNIPKSIGWLEHLERIVVAGFLSGHVHLTKLPKEFCRLRSLRDLVLTECSKMKSLPDSFCHLWNLQHIDLSFCCNLERLPDSIGRLQGLRHINLSYCHDLERLPDSIGRLRGLQHIDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain