SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43792

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene43792
CTCTTCATGAACGCCCCCATTTGTCTCAGGTGTCTTCCTCTGAGGAAATTCCGGTGGTGGATCTCAAAGGCCTCGATGGCCCTGACAGAAGCACTGTAATCCAACAAATCCGACATGCGTGTGAGCAGGATGGCGTTTTCCAGATAGTGAACCATGGAGTACCAGAAGCAGTCATGAAAAACATGATGGA

Ace file of the UniGene sp_v3.0_unigene43792

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03424.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=307.1, E=2.2e-88, N=1) [Arabidopsis thaliana] emb\|CAB40042.1\| putative flavanon	-	-	3.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr4:6483900-6485179 FORWARD LENGTH=348	8.0e-15	50%
RefSeq	Arabidopsis thaliana	NP_192787.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	1.0e-14	50%
RefSeq	Populus trichocarpa	XP_002317046.1	predicted protein [Populus trichocarpa]	1.0e-16	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMF5

Fln msg: Distance to subject end: 253 aas, your sequence is shorter than subject: 62 - 352

Fln protein: LHERPHLSQVSSSEEIPVVDLKGLDGPDRSTVIQQIRHACEQDGVFQIVNHGVPEAVMKNMM

Protein Length: 63

Fln nts: CTCTTCATGAACGCCCCCATTTGTCTCAGGTGTCTTCCTCTGAGGAAATTCCGGTGGTGGATCTCAAAGGCCTCGATGGCCCTGACAGAAGCACTGTAATCCAACAAATCCGACATGCGTGTGAGCAGGATGGCGTTTTCCAGATAGTGAACCATGGAGTACCAGAAGCAGTCATGAAAAACATGATGGA

Fln Alignment:

CL20210Contig1___HERPHLSQVSSSEEIPVVDLKGLDGPDRSTVIQQIRHACEQDGVFQIVNHGVPEAVMKNMM
A9NMF5_______________HERPQMSEISHSECIPVVDLKDLDGPNRTTIVGEIRRACEEDGFFQILNHGVPENVMKSMM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain