SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43216

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene43216
TACTCGATTTGCCATGGAAAACATAAGGCTTCTCGAGCAACTTAGAAGGTTCCAAGATTTCTATGAAGGAGGGGAGAGAGAAATTTTACTTGCAGAGGTTTCTGACTTGCGTGATCAGTTGGTTGAAGTCCTTGAAGGAAGGATGGAACATGATAAGAATCCATGTGCACTTTCAATACCACAGGAGGTG

Ace file of the UniGene sp_v3.0_unigene43216

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phragmoplast orienting kinesin 2 [Arabidopsis thaliana] gb\|ABD62997.1\| kinesin POK2 [Arabidopsis thaliana] gb\|AEE76188.1\| phragmoplast orienting kinesin 2 [Arabidopsis thaliana]	-	-	1.0e-11	66%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%

Source	Gene names
Sma3	GSVIVT00019702001; GSVIVT00036525001; PHYPADRAFT_162316; POPTRDRAFT_724006; POPTRDRAFT_927223; RCOM_0773970; RCOM_1002890;

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-
Sma3	Kinesin-related conserved domain	IPR010544	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19050.1	POK2 phragmoplast orienting kinesin 2 chr3:6578047-6590106 FORWARD LENGTH=2771	8.0e-16	66%
RefSeq	Arabidopsis thaliana	NP_188535.4	phragmoplast orienting kinesin 2 [Arabidopsis thaliana]	1.0e-15	66%
RefSeq	Populus trichocarpa	XP_002330271.1	predicted protein [Populus trichocarpa]	4.0e-18	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TPP7

Fln msg: Distance to subject end: 1898 aas, your sequence is shorter than subject: 63 - 2686

Fln protein: TRFAMENIRLLEQLRRFQDFYEGGEREILLAEVSDLRDQLVEVLEGRMEHDKNPCALSIPQEV

Protein Length: 64

Fln nts: TACTCGATTTGCCATGGAAAACATAAGGCTTCTCGAGCAACTTAGAAGGTTCCAAGATTTCTATGAAGGAGGGGAGAGAGAAATTTTACTTGCAGAGGTTTCTGACTTGCGTGATCAGTTGGTTGAAGTCCTTGAAGGAAGGATGGAACATGATAAGAATCCATGTGCACTTTCAATACCACAGGAGGTG

Fln Alignment:

CL13590Contig1___TRFAMENIRLLEQLRRFQDFYEGGEREILLAEVSDLRDQLVEVLEGRMEHDKNPCALSIPQEV
D7TPP7_______________TRFALENIRLLDQLRRFQDFYEEGERDMLLTEVSELRHQLLQFLDGNSKPHNHPNFNSLPQEV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain