SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42462

Length: 1811 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene42462

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein n=1 Tax=Populus trichocarpa RepID=B9HKY9_POPTR	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	At1g67480; F12B7.3; GSVIVT00002843001; OJ1003_F04.33; OSJNBb0089B03.12; Os02g0504900; Os04g0380300; OsI_07338; OsI_15607; OsJ_06846; OsJ_14521; POPTRDRAFT_1085553; POPTRDRAFT_565879; POPTRDRAFT_592319; RCOM_1080740; T1F15.5; VITISV_018334;

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67480.1	Galactose oxidase/kelch repeat superfamily protein chr1:25277294-25278529 FORWARD LENGTH=376	55%
RefSeq	Arabidopsis thaliana	NP_176915.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002311715.1	f-box family protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX50

Fln msg:

Fln protein: MDGTRILMGSCIQKKVLTAKSESQSIEFGCSIIPGLPDDVGKHCLALVPRVHFQSLGSVCKSWRKFIQTREFSVVRKHAGTMEEWLYVLTADPKGKGTHWQVLNPLHGRWQTLPPMPGPAKAAFGFVVIYGKLLVMAGLVEEDDGNARASADVYQYDSTLNRWSMLSKMKVARYKFACAVVNGLVYAAGGHGTCGENLSSVEVFDPQNNRWSLIESLRCPRWGCFAYAFEDKLYIMGGRSRFTIGYSRSIDVYNPKFHTWDEIKSGCTMVTACAVLDEKLLCIEWKNERRLAVFNASNNSWERVPVPLGGSLKVGFCFGSLNGKLLFFSTKMEPYYRTLVYDPNAAPGSEWQTSDIKPLGDCICSVTISA*

Protein Length: 372

Fln nts: TATATCAGGAGGAGCTGTAGAGTCCTGTCGAGCTCTTATACTGGAATCGAGTCATTGAAAACTGATAGGAAATTTGAGGATGCTTATTAGCATGGCATTGAGTCTCAAAACGGTTTTGAGATGTTAAGATCTTCAGTAGCAACAAGGAGAATTATTAATTTTCAACATGCTGTAAATAAGATGCCCGAAGTACTCTCATGACTATAAGACCTCTCTATGGTGAGCTTTAACTTTTATTTGGATGACTAGAGAAACTTCATGAATAGTAGAGAAATATGGTTGATAAATCTTCCCATTTTCAAGTGATCAAGCAGATAAGAGACTGGTTTTTGTGAAAACTGTTATGACCTGTGTTACCATGGCAGAGTCTTGCAAATCACCTTGGTCAATTGAAATAATCATCTTAATACAATAGGCAAGTAGAACAGTCTCTTGTGTACAAGTTAAGAAGTGTTTCAAAGTTCCAGGCTGTGGTGAAAGAAAGCAAAAGG_-_ATGGATGGTACCAGGATACTCATGGGATCTTGCATTCAGAAGAAAGTTTTAACAGCAAAAAGTGAATCACAGAGCATTGAATTTGGATGCTCCATTATTCCAGGTCTGCCTGATGATGTAGGTAAGCATTGTCTTGCACTTGTGCCCCGTGTGCATTTTCAGTCATTGGGTTCTGTTTGTAAGTCATGGAGGAAATTCATTCAAACCAGAGAGTTCTCTGTTGTAAGAAAACATGCCGGTACAATGGAAGAATGGCTTTATGTACTAACTGCAGATCCAAAGGGTAAAGGAACCCACTGGCAGGTTCTAAATCCTCTGCATGGCCGATGGCAGACTCTTCCTCCTATGCCTGGTCCTGCTAAGGCAGCATTCGGGTTTGTTGTGATCTATGGAAAACTTCTGGTCATGGCAGGTTTAGTTGAAGAAGATGATGGCAATGCTCGAGCTTCAGCAGATGTATACCAATATGACTCAACCTTAAACAGATGGAGCATGCTTTCAAAGATGAAGGTGGCACGCTATAAATTTGCTTGTGCGGTGGTTAATGGCCTTGTCTATGCAGCTGGTGGGCATGGAACATGTGGAGAGAATCTTTCAAGTGTTGAAGTGTTTGACCCGCAGAACAATCGATGGAGTCTGATTGAGAGTCTAAGATGCCCAAGATGGGGTTGCTTTGCTTATGCGTTTGAAGATAAGCTATATATCATGGGTGGCAGATCAAGATTCACAATTGGGTATTCAAGATCAATTGATGTTTATAACCCTAAATTCCATACCTGGGATGAAATTAAAAGTGGGTGTACTATGGTCACTGCTTGTGCTGTCTTGGACGAGAAATTACTGTGCATAGAGTGGAAGAATGAAAGGAGATTGGCAGTTTTTAATGCTTCAAACAATTCATGGGAAAGGGTGCCCGTGCCCCTTGGAGGAAGCCTCAAAGTTGGATTTTGTTTTGGCAGCCTCAATGGAAAGTTGCTGTTTTTCTCTACCAAAATGGAACCCTATTACAGGACTCTAGTCTATGATCCTAATGCTGCTCCTGGTTCAGAATGGCAGACTTCAGATATTAAACCATTGGGTGATTGCATATGCAGTGTGACAATCAGTGCTTAA___ACTATGTTTAAGCCACTTAGCACTAAGTTTTAGCCACTTAGAAATTCTAGGTTGAGTTAAATTGATTACTAAGAAAATGGTTTTAATTGGACAAAGTAAAAAAGGTCAATGGGTATAGCTGTTCATAATATAGAACTGAATTCCATCCTAATATCTACACATTTGGTGGAAACGGATATTATATTCAATACACAATCCTTCATTCTG

Fln Alignment:

CL3375Contig1___VVKESKRMDGTRILMGSCIQKKVLTAKSESQSIEFGCSIIPGLPDDVGKHCLALVPRVHFQSLGSVCKSWRKFIQTREFSVVRKHAGTMEEWLYVLTADPKGKGTHWQVLNPLHGRWQTLPPMPGPAKAAFGFVVIYGKLLVMAGLVEEDDGNARASADVYQYDSTLNRWSMLSKMKVARYKFACAVVNGLVYAAGGHGTCGENLSSVEVFDPQNNRWSLIESLRCPRWGCFAYAFEDKLYIMGGRSRFTIGYSRSIDVYNPKFHTWDEIKSGCTMVTACAVLDEKLLCIEWKNERRLAVFNASNNSWERVPVPLGGSLKVGFCFGSLNGKLLFFSTKMEPYYRTLVYDPNAAPGSEWQTSDIKPLGDCICSVTISA
A9NX50_______________VLKTKPRIHATGIYISSSMRQQSLPTNAMPCNNEPESALLPGLPDDVAKHCLALVPRIHFQSLGSVCKPWRKFLQSKEFHVVRKLAGTVEEWIYVLTTDADTERTHWQVLNSVQGKWQSLPPMPGPMKTGFGYVVIDGKLLVMAGLFEDDSGTAKASANVYMYDSALNRWSELPNMKVARYGFACAEVNGLVYAVGGHGERDENLSSVEVFDPKTNEWTMVESLRRPRWGCFACGLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWAEMKNGCVMAVAHAVLDKKLFCMEWKNERKLAVFNVVDNSWQRVPLPLTGSVTVGFCFGILNGNLLLFPTKMEPLCKTLVYDPNAMPGLEWQAIDIRPLGICICTVTITA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain