SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42137

Length: 161 nt

UniGene Fasta

>sp_v3.0_unigene42137
CCATTGATCCGGATAATTTTGCCATTTTAAAAGCACTTCTACTTAAGCTTGAAAAGAGGATCAATGAAGTTCCATTCCAGTCAGAAGAGTCAGGATTCACACGGCCTGGTCCATATATTTTTGAGTTTTTCGCAGATTTAAACATCACAATTGAAACAGCA

Ace file of the UniGene sp_v3.0_unigene42137

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gb\|AEE36333.1\| regulator of telomere elongation helicase 1 [Arabidopsis thaliana]	-	-	4.0e-06	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	76%

Source	Gene names
Sma3	GSVIVT00034419001; Os01g0592900; OsI_02661; OsJ_02439; P0710A02.28-1; PHYPADRAFT_112245; POPTRDRAFT_846802; RCOM_0980890;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase-like, DEXD box c2 type	IPR006554	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	DEAD2	IPR010614	-	-
Sma3	DNA helicase (DNA repair), Rad3 type	IPR013020	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298143.1	predicted protein, partial [Populus trichocarpa]	8.0e-13	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RE00

Fln msg: Distance to subject end: 417 aas, your sequence is shorter than subject: 53 - 765

Fln protein: IDPDNFAILKALLLKLEKRINEVPFQSEESGFTRPGPYIFEFFADLNITIETA

Protein Length: 54

Fln nts: CCATTGATCCGGATAATTTTGCCATTTTAAAAGCACTTCTACTTAAGCTTGAAAAGAGGATCAATGAAGTTCCATTCCAGTCAGAAGAGTCAGGATTCACACGGCCTGGTCCATATATTTTTGAGTTTTTCGCAGATTTAAACATCACAATTGAAACAGCA

Fln Alignment:

CL21704Contig1___IDPDNFAIXXXXXXXXXXRINEVPFQSEESGFTRPGPYIFEFFADLNITIET
A9RE00_______________IDPDNFAVLKALLLELEKRINEVPIESE-LGFTRPGPYIYEFLAEIKITYET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain