SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42126

Length: 276 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene42126
GCTACTAAGAGGTTGAAGGAGCTATTGGAAGCTCGTAAAGTTCCATCTCGTGATGCTGGGAGTGCAAGTGGTAACGGATCTGTTCAGAATAACGAGAAAGCTTTGAAACAGTCTCTTGAGCATGAACTAGAAGTAGTCGTTCGTGTGCACGAAGTTCGTTCGGAATATGAAAAGCAAACTGAAGCGAGGGCTGCAATGGCAAAGGAGCTAACCAAACTAAAGCAAGAGAATGAAACAAGTAATGGTACTCCTTCGATGTCTCCAAGTGCAAGGCAT

Ace file of the UniGene sp_v3.0_unigene42126 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding microtubule motor family protein [Arabidopsis thaliana] dbj\|BAB55445.1\| kinesin-related protein [Arabidopsis thaliana] gb\|AEE78644.1\| ATP binding microtubule motor family protein [Arabidopsis thaliana]	-	-	6.0e-07	46%
FL-Next	tr=Kinesin-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	57%
Sma3	Kinesin-like protein	-	-	4.221e-06	-

Source	Gene names
Sma3	At3g50240; At5g47820; At5g60930/MSL3_50; FRA1; GSVIVT00014868001; GSVIVT00015103001; GSVIVT00019544001; OJ1134_E08.39-1; OJ1134_E08.39-2; OJ1134_E08.39-3; Os09g0114500; OsI_30388; OsJ_28385; PHYPADRAFT_40278; POPTRDRAFT_279914; POPTRDRAFT_551661; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	cellulose microfibril organization	GO:0010215	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302432.1	predicted protein [Populus trichocarpa]	6.0e-12	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7J6Z1

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 92 - 1040

Fln protein: ATKRLKELLEARKVPSRDAGSASGNGSVQNNEKALKQSLEHELEVVVRVHEVRSEYEKQTEARAAMAKELTKLKQENETSNGTPSMSPSARH

Protein Length: 93

Fln nts: GCTACTAAGAGGTTGAAGGAGCTATTGGAAGCTCGTAAAGTTCCATCTCGTGATGCTGGGAGTGCAAGTGGTAACGGATCTGTTCAGAATAACGAGAAAGCTTTGAAACAGTCTCTTGAGCATGAACTAGAAGTAGTCGTTCGTGTGCACGAAGTTCGTTCGGAATATGAAAAGCAAACTGAAGCGAGGGCTGCAATGGCAAAGGAGCTAACCAAACTAAAGCAAGAGAATGAAACAAGTAATGGTACTCCTTCGATGTCTCCAAGTGCAAGGCAT

Fln Alignment:

CL21557Contig1___ATKRLKELLEARKVPSRDAGSA-SGNG-SVQNNEKALKQXXXXXXXXXXXXXXXXXEYEKQTEARAAMAKELTKLKQENETS----------NG---TPSMSPSAR
G7J6Z1_______________ATKRLKELLEARKTSSRDTSVATNGNGTNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSEVRAALAEELAMLKHVNEFAAKGLSPPRGKNGFARASSMSPSAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain