SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41821

Length: 1472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene41821 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxo-phytodienoic acid reductase5 [Zea mays] gb\|AAY26525.1\| 12-oxo-phytodienoic acid reductase [Zea mays]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	12-oxo-phytodienoic acid reductase	-	-	2.088e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	1.452e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		1.452e-08	%
Sma3	Phenylalanine metabolism	00360		1.452e-08	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		1.452e-08	%
Sma3	Fluorobenzoate degradation	00364		1.452e-08	%
Sma3	Tryptophan metabolism	00380		1.452e-08	%
Sma3	Xylene degradation	00622		1.452e-08	%
Sma3	Toluene degradation	00623		1.452e-08	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		1.452e-08	%
Sma3	Propanoate metabolism	00640		1.452e-08	%
Sma3	Isoflavonoid biosynthesis	00943		1.452e-08	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		1.452e-08	%
Sma3	Metabolic pathways	01100		1.452e-08	%
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	2.335e-40	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	2.335e-40	%
Sma3	Biosynthesis of plant hormones	01070	2.335e-40	%
Sma3	Metabolic pathways	01100	2.335e-40	%

Source	Gene names
Sma3	AT1G17990; AT2G06050; At1g09400; At1g17990; At1g18020; At1g76680; At1g76690; At2g06050; CHLREDRAFT_121264; CHLREDRAFT_132041; CROYEH; DDE1; F14J9.6; F28O16.5; F28O16.6; F2H15.21; GSVIVT00002893001; GSVIVT00002894001; GSVIVT00016458001; GSVIVT00021891001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76690.1	OPR2, ATOPR2 12-oxophytodienoate reductase 2 chr1:28778976-28780355 FORWARD LENGTH=374	70%
RefSeq	Arabidopsis thaliana	NP_177795.1	12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002327289.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg:

Fln protein: MGVGKRNAEENQSTLQEQKIPLMTPYQLGSFSLSHRVVLAPLTRQRSYNNIPQPHAILYYSQRTSPGGLLITEATGVSDSAQGYPDTPGIWTEEQVEAWKPIVNAVHEKGGVFFCQIWHVGRVSHVDYQPNGQSPLSSSDRKVSGQVQLPNGKDYADFSTPRTLKTEEIPHIVNDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDGVNNRTDQYGGSLENRCRFPLEVVEAVADEIGAERVGIRLSPFAKYLDSSDSDPEALGLYMAEALNKYNILYAHYVEPRIVTSREAVATNKSLLPIKKAFRGNFLVAGGYDREDGNAAIANGKADLVVYGRLFLANPDLPRRFELNAPLNKYNRDTFYISDPVVGYTDYPFL*

Protein Length: 381

Fln nts: CACAATAAATCTATCCAGCTCCAACCTGCTTTGCCAAATCGGTGGAGCTCAAGCGCTTTCATTGCAGAAAAAGAACAGCAGTTGGAGGAAGGACAGGAATCAAC_-_ATGGGAGTTGGAAAGCGTAACGCAGAAGAAAATCAATCAACCCTGCAGGAGCAGAAAATCCCATTGATGACACCGTACCAGTTGGGCTCCTTCAGCTTGTCTCACAGGGTGGTTTTGGCACCGTTGACCAGACAGAGATCCTACAACAACATACCCCAACCACATGCAATTCTGTACTATTCCCAGAGAACCAGCCCTGGAGGTCTTCTCATTACAGAAGCTACTGGCGTCTCCGACTCTGCCCAAGGGTATCCGGATACGCCTGGAATTTGGACGGAGGAGCAGGTCGAAGCGTGGAAGCCCATTGTCAATGCTGTCCACGAGAAAGGAGGCGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGGGTTTCTCATGTGGATTATCAACCCAATGGCCAGTCTCCCCTTTCATCATCAGATCGAAAAGTATCAGGACAGGTTCAACTACCCAACGGCAAGGATTATGCAGATTTTTCCACTCCTCGAACTCTAAAAACTGAGGAGATTCCACATATTGTTAATGATTTTCGTCTTGCTGCAAGAAATGCTATCAAAGCAGGTTTTGATGGTGTTGAAATTCATGGTGCTCATGGATATCTTCTTGACCAATTTATGAAAGATGGTGTAAATAACAGGACCGATCAATATGGTGGGTCACTGGAGAACCGGTGCAGGTTTCCTCTGGAAGTTGTTGAAGCAGTGGCAGATGAAATTGGAGCAGAGCGAGTGGGAATACGCCTCTCTCCATTTGCAAAATATCTAGATTCCAGTGACTCAGATCCTGAGGCACTGGGGCTCTACATGGCTGAGGCTTTAAATAAATACAACATCCTGTATGCCCACTATGTGGAGCCCAGAATTGTGACTTCAAGAGAAGCAGTTGCAACTAACAAGAGTCTACTTCCAATCAAGAAGGCATTCAGGGGAAACTTCTTGGTGGCAGGGGGTTATGACAGAGAAGATGGAAATGCAGCAATTGCAAATGGCAAGGCTGATCTTGTAGTTTATGGTCGACTTTTCCTGGCCAACCCGGATTTGCCTAGAAGATTTGAGTTAAATGCACCTCTCAACAAATACAACAGAGACACTTTCTACATTTCTGATCCTGTGGTTGGTTACACAGACTATCCATTTCTATAG___CTTTCACACATGTTCTCCAAAACTCTTTGTTGCTATTATGTTAGGCTTTTATCCTAGGTTCCCAAATAGAAAGGCTGTTGTGCGCGGAAGCCTTTTTAATAATAAATAAGTCTCATGTTAACGTGAGACGGAAGTGTAATGTAATGTAATTGTGGTTTTCAGTAATTTGGAAATTGCATCGTTAAAGAGCAAGTCATCAATAAATGTATAACATTTTGTGATAGTCTA

Fln Alignment:

CL17494Contig1___GKRNAEENQSTLQEQKIPLMTPYQLGSFSLSHRVVLAPLTRQRSYNNIPQPHAILYYSQRTSPGGLLITEATGVSDSAQGYPDTPGIWTEEQVEAWKPIVNAVHEKGGVFFCQIWHVGRVSHVDYQPNGQSPLSSSDRKVSGQVQLPNGKDYADFSTPRTLKTEEIPHIVNDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDGVNNRTDQYGGSLENRCRFPLEVVEAVADEIGAERVGIRLSPFAKYLDSSDSDPEALGLYMAEALNKYNILYAHYVEPRIVTSREAVATNKSLLPIKKAFRGNFLVAGGYDREDGNAAIANGKADLVVYGRLFLANPDLPRRFELNAPLNKYNRDTFYISDPVVGYTDYPFL
A9NT17_______________GKENTEENQS---KQQIPLITPYQLGPFSLSHRVVLAPLTRQRSYKCVPQPHAILYYSQRTSPGGLLIAEATGVSDTAQGYPDTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHTGRASHVDYQPNGQAPVSSTDRKISGQVVLPNGKDLADYSPPRALKIEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRIDQYGGTLENRCRFPLEVVEAVANEIGAERVGIRLSPFAQFLESSDSDPEALGLYMAETLNRYNILYAHYVEPRLVTTFEPVATNKSLLPMRKAFKGSFLVAGGYDREDGNAAIASGKADLVVYGRIFLANPDLPRRFELNASLNKYDRNTFYIPDPVVGYTDYPFL

SSRs (tot: 1)

Start position	End position	Sequence	Length
79	94	ATTAC ATTAC ATTAC A	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain