SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41657

Length: 915 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene41657 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PII-like protein n=1 Tax=Pinus pinaster RepID=Q70YP6_PINPS	-	-	0.0	81%
FL-Next	tr=PII-like protein; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Sma3	PII protein	-	-	1.015e-29	-

Source	Gene names
Sma3	AT4g01900; At4g01900; CHLREDRAFT_206116; GLB1; GLB1-PII; GLNB; GSVIVT00007383001; GSVIVT00028171001; GSVIVT00038598001; MICPUCDRAFT_49733; MICPUN_61739; OSJNBa0077L08.6; Os05g0133100; OsI_18340; OsJ_17013; PHYPADRAFT_175680; POPTRDRAFT_552576; PpGLB1; RCO

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	GO:0046912	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	cellular carbohydrate metabolic process	GO:0044262	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-
Sma3	Nitrogen regulatory protein PII, conserved site	IPR017918	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G01900.1	PII, GLB1 GLNB1 homolog chr4:821736-823294 FORWARD LENGTH=196	8.0e-39	77%
RefSeq	Arabidopsis thaliana	NP_192099.1	GLNB1-like protein [Arabidopsis thaliana]	1.0e-38	77%
RefSeq	Populus trichocarpa	XP_002302789.1	predicted protein [Populus trichocarpa]	9.99967e-42	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q70YP6

Fln msg: Separated hits, possible frame ERROR between 348 and 380, atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRxxxxxxxxxxxxVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEILTGVHQDVTDSN*

Protein Length: 234

Fln nts: _-_ATGGCTGCCCATCTGCCTCTATTTGTCAAAGGATCTATATTTTCTCTACCATCATCGACATCGACGTCTTCTTCCTGTACGTATTCGAGCATATCGCATACAGCGGCATCTCCTGGATTTCACTCATCTCCAGCAGCAGCCAATAAATCTGTAAAATTGGGAACGATGCAGAGGATGGATGGTGTCAGGTCGGTGAAGCACCGAATGACAAGTCTGCATGCAAAGATGGAGAAGAGGCAACAGATTAAGGCATCGGCCCAGGCACCAAATGGGACCAACACTCATCCAGATTATGTCCCAGAAGCCAACTTTTACAAAGTAGAAGCAATATTGAGGCCATGGCGCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTCTCTGATGTTAGAGGTTTTGGAGTTCAGGCTGGATCTGCAGAACGGCAAGCAGGCTCCGAGTTTTCTAAAGACAATTTTGTGTCAAAAGTAAAGATGGAGATTGTGGTATCTAAAGATCAGGTAGAAGCAGTAATTGATGCAATCATTGATGAGGCAAGAACTGGAGAAATTGGAGATGGCAAAATATTTGTGGTTCCAGTTGCAGATGTCATTCGTGTGAGAACAGGTGAGCGTGGACTTGAAGCAGAGAGAATGGCTGGTGGACGATCAGAGATACTTACAGGTGTACATCAAGACGTTACAGACAGCAACTAA___ATCACTTTTAGACACTATAATTGAGTCAAAGCCTGACGCTTGAGTATGGTGCACAGGAGTAAATAGATTGAGATATGGTGATTGGATGGCTTTACATGGAAGTGGTCAAACTTTATCATTTATGTTAATTGACTGTAGAGTTTAAATATTAtTGGTGATTGGATGGCTTTAGATGGAAGTGGTCAAACTTTATCATTTATGTTAATTGACTGTAGAGT

Fln Alignment:

CL15726Contig1___MAAHLPLFVKGXXXXXXXXXXXXXXXXXXXXXXTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRIxxxxxxxxxxxVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEIL
Q70YP6_______________MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRIxxxxxxxxxxxVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERDLKPERMAGGDQRYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain