SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene41006

Length: 1045 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene41006 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to CDK5 regulatory subunit-associated protein n=1 Tax=Nicotiana tabacum RepID=Q75WU8_TOBAC	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	CDK5RAP1-like protein	-	-	6.904e-09	-

Source	Gene names
Sma3	AP22.85; AT4G36390; At4g36390; C7A10.970; GSVIVT00036866001; LOC_Os11g38030; MICPUCDRAFT_23665; MICPUCDRAFT_45957; MICPUN_66643; MICPUN_78530; NtCAPL; OSJNBa0074L11; OSTLU_2500; OSTLU_42298; Os11g0592800; Ot02g06570; Ot12g00930; PHATRDRAFT_26780; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	regulation of cyclin-dependent protein kinase activity	GO:0000079	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	TRAM domain	IPR002792	-	-
Sma3	Methylthiotransferase	IPR005839	-	-
Sma3	tRNA-i(6)A37 modification enzyme MiaB	IPR006463	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Methylthiotransferase, N-terminal	IPR013848	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36390.1	Methylthiotransferase chr4:17194746-17197054 REVERSE LENGTH=640	79%
RefSeq	Arabidopsis thaliana	NP_195357.2	Methylthiotransferase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002310277.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF7

Fln msg: Distance to subject end: 93 aas,

Fln protein: MVDVVCGPDAYRDLPRLLEAVDYGQKGVNTLLSLEETYADISPVRIASNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVGELWEQGVKEVMLLGQNVNSYNDISILDGNGAFPTGISWALSQGFSSICKVKNTGLRFSNLLDRLSIEFPEMRFRFTSPHPKDFPDDLLFLMKDRWNICKSIHLPAQSGSTAVLERMRRGYTREAYLDLVERIRNIIPDVGLSSDFICGFCGETEEDHANTLSLINSVGYDMAYLFAYSLREKTHAHRNYLDDVPYNVKQRRLSELISAFRESTGQRYDSQVGTTQLVLVEGPNKRAPESELIGKSDRG

Protein Length: 339

Fln nts: TGAAAGAAAAAATAATTGATTCAGACAAG_-_ATGGTTGATGTAGTTTGTGGGCCTGATGCTTACAGGGACTTGCCTCGCTTGCTAGAAGCTGTAGATTATGGTCAAAAGGGAGTTAATACACTTCTGTCCCTTGAAGAAACATATGCTGATATCAGTCCAGTAAGAATTGCTAGCAATTCAGTTACAGCATTTGTCTCCATAATGCGTGGCTGTAACAATATGTGTTCATTCTGCATTGTACCTTTTACACGAGGGAGAGAGAGGTCACGGCCAGTAGAGTCCATTGTGAGAGAGGTGGGAGAGCTTTGGGAGCAAGGTGTGAAAGAAGTAATGCTTCTTGGTCAGAATGTGAACAGTTATAATGATATCTCTATCCTTGATGGGAATGGTGCATTTCCTACAGGGATCAGTTGGGCTCTTAGTCAAGGCTTTTCCAGCATATGCAAGGTGAAGAATACTGGATTGCGTTTTTCCAATCTATTAGACCGTCTATCTATTGAATTTCCTGAAATGCGGTTCAGATTCACATCTCCCCATCCTAAGGATTTTCCTGATGACTTGTTGTTCCTGATGAAAGATCGATGGAACATCTGTAAAAGCATTCATTTACCAGCACAGAGTGGGAGTACAGCTGTTCTTGAAAGAATGCGACGAGGTTATACACGAGAAGCTTATCTGGATCTTGTAGAAAGAATACGGAATATTATTCCTGATGTTGGCTTAAGCAGTGACTTTATCTGTGGATTCTGTGGTGAAACAGAAGAGGACCATGCTAATACATTGAGCCTCATTAACTCCGTAGGTTACGATATGGCATACTTGTTTGCCTACAGTCTACGGGAGAAAACACATGCTCATCGGAACTATCTAGATGATGTTCCATATAATGTCAAACAAAGAAGGCTGTCAGAGCTCATCAGTGCTTTCCGGGAATCAACAGGTCAGAGGTATGACTCACAGGTTGGTACGACTCAACTTGTGCTTGTTGAGGGACCCAATAAAAGAGCTCCAGAAAGTGAATTAATTGGAAAAAGTGACAGGGGACA

Fln Alignment:

CL7734Contig1___MLLGQNVNSYNDISILDGNGAFPTGISWALSQGFSSICKVKNTGLRFSNLLDRLSIEFPEMRFRFTSPHPKDFPDDLLFLMKDRWNICKSIHLPAQSGSTAVLERMRRGYTREAYLDLVERIRNIIPDVGLSSDFICGFCGETEEDHANTLSLINSVGYDMAYLFAYSLREKTHAHRNYLDDVPYNVKQRRLSELISAFRESTGQRYDSQVGTTQLVLVEGPNKRAPESELIGKSDRG
B8LMF7_______________MLLGQNVNSYNDISILDGNGAVPTGNSWALSQGFSSICKVKSTGLRFSNLLDRLSIEFPEMRFRFTSPHPKDFPDDLLFLMKDRWNICRSIHLPAQSGSTAVLERMRRGYTREVYLDLVERIQNIIPDVGLSSDFICGFCGETEQDHADTLSLIKSVGYDMAYLFAYSLREKTHAHRNYVDDVPDDVKQRRLSELISAFRESTGQRYDSQVGTTQLLLVEGPNKRAPESELIGKSDRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain