SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40844

Length: 565 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene40844
TATCAACGCAGAGTACGGGGTGTACTCTGAGAATTGTGGACTTGAGAACATTATTATTTCCTGGGGCCACGATGAATATATGCACATGGTAGCTAAAATGAATAAGACAACATTACCCCCGGCGGCTCTCTTTATCATAAGGTTCCACTCGTTCTACGCTCTGCATCGTGCTGGTGCGTACACACATTTGATGAACGATAAAGATCATGAGATGCTTGAGTGGCTTAAAATATTCAATAAATATGACTTATACAGCAAAAGTAAAGTGAGAGTTGATGTGGAGGAAGTGAAGCCATATTACCAATCACTCATTGATAAGTACTTCCCTTCCAAATTGAGATGGTGATTACGGATGGCCAGGGATTGTCAGTGGGATAGGGTGACTCAAGAAAAAGGGTGAAGGATATTATTGACTTTTCTATTAGTATAGGACAATGAGCAGCAGTACAATTAGCAAAAGCATATTTACAAGTTTTTACAAATTTAAATCATTAGAAATTCAATCTAGAGCCTGTCTCATCAGCCAAATTTTAATTTTTTTAATTTTTTTATTTTATTAAAACAT

Ace file of the UniGene sp_v3.0_unigene40844 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRE87 protein n=1 Tax=Pinus radiata RepID=O65014_PINRA	-	-	0.0	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Myoinositol oxygenase, putative	-	-	8.619e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol oxygenase.	EC:1.13.99.1	-	4.372e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.372e-32	%
Sma3	Inositol phosphate metabolism	00562		4.372e-32	%

Source	Gene names
Sma3	At1g14520; At2g19800; At4g26260; At5g56640; F14L17.30; F6F22.17; GSVIVT00016624001; GSVIVT00034252001; GSVIVT00034254001; LOC_Os06g36560; MIK19.9; MIOX; MIOX1; MIOX2; MIOX4; MIOX5; Os06g0561000; OsI_23379; OsJ_21699; P0456F09.5; P0528E12.30; PHYPADRAFT_58

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	inositol oxygenase activity	GO:0050113	Molecular Function	-
Sma3	inositol catabolic process	GO:0019310	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14520.1	MIOX1 myo-inositol oxygenase 1 chr1:4968376-4969954 REVERSE LENGTH=311	70%
RefSeq	Arabidopsis thaliana	NP_001154337.1	inositol oxygenase 1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002311571.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU49

Fln msg: your sequence is shorter than subject: 115 - 316

Fln protein: INAEYGVYSENCGLENIIISWGHDEYMHMVAKMNKTTLPPAALFIIRFHSFYALHRAGAYTHLMNDKDHEMLEWLKIFNKYDLYSKSKVRVDVEEVKPYYQSLIDKYFPSKLRW*

Protein Length: 116

Fln nts: TATCAACGCAGAGTACGGGGTGTACTCTGAGAATTGTGGACTTGAGAACATTATTATTTCCTGGGGCCACGATGAATATATGCACATGGTAGCTAAAATGAATAAGACAACATTACCCCCGGCGGCTCTCTTTATCATAAGGTTCCACTCGTTCTACGCTCTGCATCGTGCTGGTGCGTACACACATTTGATGAACGATAAAGATCATGAGATGCTTGAGTGGCTTAAAATATTCAATAAATATGACTTATACAGCAAAAGTAAAGTGAGAGTTGATGTGGAGGAAGTGAAGCCATATTACCAATCACTCATTGATAAGTACTTCCCTTCCAAATTGAGATGGTGA___TTACGGATGGCCAGGGATTGTCAGTGGGATAGGGTGACTCAAGAAAAAGGGTGAAGGATATTATTGACTTTTCTATTAGTATAGGACAATGAGCAGCAGTACAATTAGCAAAAGCATATTTACAAGTTTTTACAAATTTAAATCATTAGAAATTCAATCTAGAGCCTGTCTCATCAGCCAAATTTTAATTTTTTTAATTTTTTTATTTTATTAAAACAT

Fln Alignment:

CL5549Contig1___NAEYGVYSENCGLENIIISWGHDEYMHMVAKMNKTTLPPAALFIIRFHSFYALHRAGAYTHLMNDKDHEMLEWLKIFNKYDLYSKSKVRVDVEEVKPYYQSLIDKYFPSKLRW
A9NU49_______________NTKYGVYSEKCGLENVIISWGHDEYMHMVAKMNKTTLPPAALFIIRFHSFYAMHRAGAYTHLMNDEDKEMLEWVKIFNKYDLYSKSKVRVDVEEVKPYYQSLIDKYFPSKLRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain