SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene40229

Length: 144 nt

UniGene Fasta

>sp_v3.0_unigene40229
GATATATCAGAAGCTGCCACATTTGAGCAGCGACGTGCCTACAAACTAGAACTTCAGGAAGGAATTTCGCTTTTCAACAGAAAGCCTTCTAAGGGTATCCAATTTCTTATCAATGCAAAAAAGGTTGGGGACTCCCCTGAGGAT

Ace file of the UniGene sp_v3.0_unigene40229

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sec7 domain containing protein	-	-	3.0e-06	43%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	85%
Sma3	Putative guanine nucleotide-exchange protein GEP2	-	-	1.679e-08	-

Source	Gene names
Sma3	AT4g35380; AT4g38200; At1g01960; At3g60860; F20D10.320; F22M8.9; F23E12.60; GEP2; GSVIVT00026361001; GSVIVT00036299001; LOC_Os03g14260; Os03g0246800; OsI_06212; OsI_10738; OsI_23743; OsJ_05728; OsJ_10127; OsJ_22013; P0040H10.42; P0437H03.126; PHYPADRAFT_1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ARF guanyl-nucleotide exchange factor activity	GO:0005086	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	regulation of ARF protein signal transduction	GO:0032012	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein chr3:22484804-22491510 FORWARD LENGTH=1793	4.0e-18	80%
RefSeq	Arabidopsis thaliana	NP_191645.1	SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]	6.0e-18	80%
RefSeq	Populus trichocarpa	XP_002313570.1	predicted protein [Populus trichocarpa]	1.0e-19	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SJM0

Fln msg: Distance to subject end: 1106 aas, your sequence is shorter than subject: 48 - 1772

Fln protein: DISEAATFEQRRAYKLELQEGISLFNRKPSKGIQFLINAKKVGDSPED

Protein Length: 49

Fln nts: GATATATCAGAAGCTGCCACATTTGAGCAGCGACGTGCCTACAAACTAGAACTTCAGGAAGGAATTTCGCTTTTCAACAGAAAGCCTTCTAAGGGTATCCAATTTCTTATCAATGCAAAAAAGGTTGGGGACTCCCCTGAGGAT

Fln Alignment:

CL20383Contig1___DISEAATFEQRRAYKLELQEGISLFNRKPSKGIQFLINAKKVGDSPED
D8SJM0_______________ETSEVATFEQRRAYKLEFQEGISLFNRKPSKGIQFLINAKKIGDSPKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain