SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39804

Length: 683 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene39804 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA pseudourine synthase 6 [Arabidopsis thaliana] sp\|Q9SVS0.1\|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb\|CAB36821.1\| hypothe	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	RNA-uridine isomerase 6	-	-	9.576e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isomerases, Intramolecular transferases (mutases), Transferring other groups.	EC:5.4.99.-	-	4.731e-06	-

Source	Gene names
Sma3	At4g21770; F17L22.230; GSVIVT00006897001; LOC_Os07g46600; Os07g0660400; OsI_27198; OsJ_024448; P0496C02.118; PHYPADRAFT_147611; POPTRDRAFT_555355; RCOM_0905340; RCOM_0905350; VITISV_030809;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G21770.1	Pseudouridine synthase family protein chr4:11564028-11566345 REVERSE LENGTH=472	66%
RefSeq	Arabidopsis thaliana	NP_193908.1	RNA pseudourine synthase 6 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002304926.1	predicted protein [Populus trichocarpa]	71%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain