SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39569

Length: 218 nt

UniGene Fasta

>sp_v3.0_unigene39569
GATGAAAGCAGTGAGTTTGATGTTCTTGTGGCAAGTGATGCTGTGGGAATGGGTCTAAACCTCAATATTCGTCGAATAATATTTTCAAAATTGGAGAAATTTGATGGTGTAGAGATGCGCAAGCTTACAATACCAGAGATAAAGCAAATAGCAGGCAGGGCAGGGAGGTATGGCTCAATGTTTCCAAATGGGGAAGTCACATGCATGTCAGGCTATGA

Ace file of the UniGene sp_v3.0_unigene39569

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RTM6_RICCO	-	-	3.0e-25	82%
FL-Next	tr=ATP-dependent RNA helicase SUPV3L1; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	83%
Sma3	ATP-dependent RNA and DNA helicase, putative	-	-	3.676e-12	-

Source	Gene names
Sma3	AT4g14790; At4g14790; GSVIVT00020028001; GSVIVT00020941001; H0219H12.4; LOC_Os03g53500; MICPUCDRAFT_19531; MICPUN_82395; OJ1124_H03.19; OSIGBa0097P08.9; OSJNBa0036B21.27; OSJNBa0072F16.4; OSTLU_36409; Os03g0746500; Os04g0459800; OsI_13485; OsI_16164; OsJ_

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14790.1	ATSUV3, EDA15 ATP-dependent RNA helicase, mitochondrial (SUV3) chr4:8496351-8499829 REVERSE LENGTH=571	5.0e-28	73%
RefSeq	Arabidopsis thaliana	NP_193215.2	ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis thaliana]	7.0e-28	73%
RefSeq	Populus trichocarpa	XP_002315757.1	predicted protein [Populus trichocarpa]	2.0e-31	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7K3R2

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 72 - 570

Fln protein: DESSEFDVLVASDAVGMGLNLNIRRIIFSKLEKFDGVEMRKLTIPEIKQIAGRAGRYGSMFPNGEVTCMSGY

Protein Length: 73

Fln nts: GATGAAAGCAGTGAGTTTGATGTTCTTGTGGCAAGTGATGCTGTGGGAATGGGTCTAAACCTCAATATTCGTCGAATAATATTTTCAAAATTGGAGAAATTTGATGGTGTAGAGATGCGCAAGCTTACAATACCAGAGATAAAGCAAATAGCAGGCAGGGCAGGGAGGTATGGCTCAATGTTTCCAAATGGGGAAGTCACATGCATGTCAGGCTATGA

Fln Alignment:

CL13190Contig1___DESSEFDVLVASDAVGMGLNLNIRRIIFSKLEKFDGVEMRKLTIPEIKQIAGRAGRYGSMFPNGEVTCMSG
G7K3R2_______________DASSEFDVLVASDAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain