SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39326

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene39326
TGCTGATCAAATGGGTCTTGGAAAGACTATTCAGACTATTGGATTCCTTGCACATCTGAAGGGAATGGGAATACATGGACCTTTCTTGATAGTTGCTCCTCTTTCTACTCTCTCAAATTGGGTGAATGAATTTAACAGATTTGTTCCAAGCATGAGTGTGCTCCTTTATCATGGATCAAAGAAAGAACGAGCTGAGTTGAGGATCAAGTATATGCCCGTAACAATGGGCCCAACATTCCCTGTTGTTATCACATCTTATGATGTGGCGTTGAATGATTATAAGGTTTTCGCTCGATACAAGTGGAAATATCTTGTTGTTGATGAGGGACATCGGTTGAAGAATTTCAATTGCAAG

Ace file of the UniGene sp_v3.0_unigene39326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj\|BAF34944.1\| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb\|EEE69802.1\| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group]	-	-	1.4013e-45	70%
FL-Next	sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Chromatin remodeling complex subunit	-	-	8.136e-13	-

Source	Gene names
Sma3	At3g06010; At3g12810; At5g19310; CHR1530; CHR1545; CHR3504; CHR904; CHR905; CHR928; CHR929; CHR930; DDM1; DDM1b; F2O10.3; GSVIVT00019937001; GSVIVT00024954001; GSVIVT00025371001; GSVIVT00025649001; LOC_Os03g51230; MICPUCDRAFT_54122; MICPUCDRAFT_59573; MIC

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	HSA	IPR006562	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66750.1	DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 chromatin remodeling 1 chr5:26649050-26652869 FORWARD LENGTH=764	67%
RefSeq	Arabidopsis thaliana	NP_201476.1	chromatin remodeling 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002310223.1	chromatin remodeling complex subunit [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XFH4

Fln msg: Distance to subject end: 420 aas, your sequence is shorter than subject: 118 - 764

Fln protein: ADQMGLGKTIQTIGFLAHLKGMGIHGPFLIVAPLSTLSNWVNEFNRFVPSMSVLLYHGSKKERAELRIKYMPVTMGPTFPVVITSYDVALNDYKVFARYKWKYLVVDEGHRLKNFNCK

Protein Length: 119

Fln nts: TGCTGATCAAATGGGTCTTGGAAAGACTATTCAGACTATTGGATTCCTTGCACATCTGAAGGGAATGGGAATACATGGACCTTTCTTGATAGTTGCTCCTCTTTCTACTCTCTCAAATTGGGTGAATGAATTTAACAGATTTGTTCCAAGCATGAGTGTGCTCCTTTATCATGGATCAAAGAAAGAACGAGCTGAGTTGAGGATCAAGTATATGCCCGTAACAATGGGCCCAACATTCCCTGTTGTTATCACATCTTATGATGTGGCGTTGAATGATTATAAGGTTTTCGCTCGATACAAGTGGAAATATCTTGTTGTTGATGAGGGACATCGGTTGAAGAATTTCAATTGCAAG

Fln Alignment:

CL9626Contig1___ADQMGLGKTIQTIGFLAHLKGMGIHGPFLIVAPLSTLSNWVNEFNRFVPSMSVLLYHGSKKERAELRIKYMPVTMGPTFPVVITSYDVALNDYK-VFARYKWKYLVVDEGHRLKNFNCK
Q9XFH4_______________ADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain