SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39094

Length: 899 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene39094 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone H4 [Hyacinthus orientalis]	-	-	2.0e-38	100%
FL-Next	sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Sma3	Histone H4	-	-	1.229e-11	-

Source	Gene names
Sma3	ABE7; AT1G07820; At1g07660; At1g07820; At2g28740; At3g45930; At3g46320; At3g53730; At5g59690; At5g59970; CHLREDRAFT_100020; CHLREDRAFT_100611; CHLREDRAFT_100662; CHLREDRAFT_106054; CHLREDRAFT_110341; CHLREDRAFT_110445; CHLREDRAFT_110527; CHLREDRAFT_110979

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	actin cytoskeleton	GO:0015629	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59970.1	Histone superfamily protein chr5:24146352-24146663 REVERSE LENGTH=103	100%
RefSeq	Arabidopsis thaliana	NP_190941.1	histone H4 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002310853.1	histone H4 [Populus trichocarpa]	100%

Full-Lengther Next Prediction

SSRs (tot: 3)

Start position	End position	Sequence	Length
29	46	AT AT AT AT AT AT AT AT AT	18
114	126	AGAT AGAT AGAT A	13
124	143	AT AT AT AT AT AT AT AT AT AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain