SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38936

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene38936
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGATTATACGTGGATCAGTTGTTCATTCATGACCCTGATGGCTTCATGATCGAAATGTGTAATTGTGAGAATCTCCCTGTGGTGCCATTGACATCCAATTCTCATGCTTGCAGGTTTCCATCGGCCATTGATTCAAAACTGCAAATGATGGATATGAGCCCACCAAACCAACAGCAACAAAAAATAGTGGAGCCACCATCTGTACCTCAGGAAATGCTCACGTTCAATAGGGGCAATCGAGGACATGAAGCTGAGTTTGGCATTGTGATATGATTGAGAAAATCCAGTCCTCAAAATTATTTTTATTTTTTGACAACATATTTAGAGGGGCGTGATGATTCATTGATCAGTTTGCAGATCTGTGACTGCAACCTTTCTGATGTGGACAGAATTCTAACACCCCATCGCTATTGTTTGGGTTGGTGTGATGACATAATAAATTGATTTAATTTAATAATATTTGTATTGCAATGGA

Ace file of the UniGene sp_v3.0_unigene38936 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase n=1 Tax=Zea mays RepID=B6SYC7_MAIZE	-	-	8.0e-13	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	MtrDRAFT_AC148340g32v2; OSJNBa0011L07.2; OSJNBa0089K24.11; OSJNBa0091D06.24; Os01g0173600; Os04g0538900; OsI_00595; OsI_16808; OsJ_00566; OsJ_15616;

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	0.0	-
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15380.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:5290955-5292287 FORWARD LENGTH=174	1.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_001031049.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	2.0e-13	50%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	9.0e-14	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU68

Fln msg: your sequence is shorter than subject: 105 - 170

Fln protein: IPLLKQWYQRRVRGGLYVDQLFIHDPDGFMIEMCNCENLPVVPLTSNSHACRFPSAIDSKLQMMDMSPPNQQQQKIVEPPSVPQEMLTFNRGNRGHEAEFGIVI*

Protein Length: 106

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGATTATACGTGGATCAGTTGTTCATTCATGACCCTGATGGCTTCATGATCGAAATGTGTAATTGTGAGAATCTCCCTGTGGTGCCATTGACATCCAATTCTCATGCTTGCAGGTTTCCATCGGCCATTGATTCAAAACTGCAAATGATGGATATGAGCCCACCAAACCAACAGCAACAAAAAATAGTGGAGCCACCATCTGTACCTCAGGAAATGCTCACGTTCAATAGGGGCAATCGAGGACATGAAGCTGAGTTTGGCATTGTGATATGA___TTGAGAAAATCCAGTCCTCAAAATTATTTTTATTTTTTGACAACATATTTAGAGGGGCGTGATGATTCATTGATCAGTTTGCAGATCTGTGACTGCAACCTTTCTGATGTGGACAGAATTCTAACACCCCATCGCTATTGTTTGGGTTGGTGTGATGACATAATAAATTGATTTAATTTAATAATATTTGTATTGCAATGGA

Fln Alignment:

CL4110Contig2___QWYQRRVRG-GLYVDQLFIHDPDGFMIEMCNCENLPVVPLTSNSHACRFPSAIDSKLQMMDMSPP
A9NU68_______________KYVKRRVEEEGLYVDQLFIHDPDGFMIEMCTCENLPVVPLASASPACRFPSAINSKLQMMNISPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain