SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene38930

Length: 2123 nt

UniGene Fasta

>sp_v3.0_unigene38930
ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGTGATTTGGCCAAAAGGAGGTCTACTTCAACTTATGCCTTTACTCTTGCAGGGAGAGCGAGAGCTATTAGTTGGATGTAGAAACTAAATGAAACAGTTGCTTTATCCACCACAAAGGCAAAGTATAAATTTGTCTCACATGCTTGCAAAGAGGAAATTTAGTTGAAGGGTCTTCTAGGTGACTATGTTAGAATGCAGAACAATGTAACTGTATTTTGTGATAGTCAAAGCGCTATATATTTGGTTACATATCCAATTCATCATAGTAAGACTAAGCATATTGATACAAAGTACCATCTTGTAAGACATATCATTGATGGTGGAGTAGATCTTAAAAAGGTCCACACTCAAGAAAAATGTGCAACCATGTTTACGAAAATAGTGTTGTTACAGACATTGTGGTGGTGTTTGGATTCTCTTGGGTTATAGAAGAGGTGATGAAAGGACTTTGGCAAGGTCAAGGTGTCAAGAAATTGTTGTCAATGTGGAGCTTGTTAGAGTATGACAACAATTTAATTAAAAGAAAATGCAAAAATCGGATTTACCTAAGTAAATCATTTGTTACAATTACTCTAACAATGTTGGTTTTTGAAACCAAATGGAAGTTACAGAAACTATTGTAATAATGCATACTTCATTTATGAAGATCGAGAAATTAAAGAGGCACGTAAGAATGATTGTAATTTTCTCTTGATAATAGAAAACCTTACCTTGCCCATGGATGTTTCCTTGACAAATTGTCAAGGATTTACCACATAAAATCTCTATGTATCATTCATTTTTGTCATTATTTCTCTATCATTGAATGCTTGAACAAACCAGAATACCAACAATATCAACAATCTCTTTATCATCCCAACATGAAATGCTTATGTTTCTTGATTTTGAGGCTTCTTCTAAGTGTGTGGACCCGCTTACCAAACTTGTTGATTTTTGTTGAAAATTGTAGCAAGAGGTGGTCTTTTGGCTCGTGCTTAGCCAGAAAGACCGAGTTTGTCTTTCCTTTGACCATGGACAAGTTCATGGAGTTGGTAAATTCATGTGTAGTGTAGGAGGACCAGTTATGAGGACCCTTCATTTAGTTTGACTATAGATCGAGTGGTAGTTGTAAATTTATATAGAACGAATTGGGTGCTTCAGTCCTAATTGAAGCATGGACAAGTTAAACAAGCAGTTGACTTAATTAAGTAGTCAATATCAACTCATGTTCTAAATTTGCACTTGCCAAATATAGCTAGATCGAATCAATAAAAAGAGGACGAAGGCATGAGTTTATTATAATTGTTTTGTGCACAAAGGTTTGTGACAAGACAAAGCTCATGAGTTTGGGAGAGAGAGCCTTGATTATGGAGCGCAGGAATTGTGTCCAAAGGAATAAGAGATCACAGATGAGCAAGAATTTAGGAGATTGATGGTGCACAAAATTAAGGAGCTTATGTGCTAAGATTTGGCAGGCCAAAAGTGTGCATGGATTTGCGCAAGGAATAAGGGCTTCTAATGTGCAAGAGAATAAGAGTTGGAATCAAGCAAGATGTGGGGGAAGTCAAGGATTCAATAGGGGATAGTTGTGTGCAGGAACCAAGATCAAGTAGTGATCAAGGTAGGCCCAGATCAAGTAGTGATCAAGGCAAGCCGAGATCAACTATATCCGTTGAGATTTGTGAGAGAAGCAGAACGCTTTCTCAAAGAGACAGATTGCTTTGTAATAGATTCAAATGCTCCAAGGCAATCAATAAAATAGCCACATCAAGCAAGCAGGTTTTCCCTATTGGGTTTTCTAAGAAAACCCTGTCAATTTGTGCATGTGTTTTTATCTCTCTGTTTTTATTCTGTTGCATATGATTTGTTAAGAGACTTTGTATCTTGGTGAAAGTAAACTAGTTTCAGTTTTCAATTATTCATTTAAGTAGTTGCAGAGTTTCGTGGAAATTTAACATGGTATGAAAGTAGGGATCAGTATAAAGACTAGCACTAGATTGATTAGTTAGTAGATAGCGCATATCAAGCAAAAGGCTTGGGCTAGAGTTTTGAAGAGAAGGCTTTTTTTTCAATGGCAGATTTGTTTTGAGTTGAAAAAAATATCGATTC

Ace file of the UniGene sp_v3.0_unigene38930

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	1.0e-29	44%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	44%

Source	Gene names
Sma3	AT4g10460; At2g07550; F7L13.40; F9K21.100; Rtsp-1AA; pol;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 154 - 542

Fln protein: CLSSGINAEYAGDLAKRRSTSTYAFTLAGRARAISWM*KLNETVALSTTKAKYKFVSHACKEEI*LKGLLGDYVRMQNNVTVFCDSQSAIYLVTYPIHHSKTKHIDTKYHLVRHIIDGGVDLKKVHTQEKCATMFTKIVLLQTLWWCLDSLGL*

Protein Length: 155

Fln nts: ACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGTGATTTGGCCAAAAGGAGGTCTACTTCAACTTATGCCTTTACTCTTGCAGGGAGAGCGAGAGCTATTAGTTGGATGTAGAAACTAAATGAAACAGTTGCTTTATCCACCACAAAGGCAAAGTATAAATTTGTCTCACATGCTTGCAAAGAGGAAATTTAGTTGAAGGGTCTTCTAGGTGACTATGTTAGAATGCAGAACAATGTAACTGTATTTTGTGATAGTCAAAGCGCTATATATTTGGTTACATATCCAATTCATCATAGTAAGACTAAGCATATTGATACAAAGTACCATCTTGTAAGACATATCATTGATGGTGGAGTAGATCTTAAAAAGGTCCACACTCAAGAAAAATGTGCAACCATGTTTACGAAAATAGTGTTGTTACAGACATTGTGGTGGTGTTTGGATTCTCTTGGGTTATAG___AAGAGGTGATGAAAGGACTTTGGCAAGGTCAAGGTGTCAAGAAATTGTTGTCAATGTGGAGCTTGTTAGAGTATGACAACAATTTAATTAAAAGAAAATGCAAAAATCGGATTTACCTAAGTAAATCATTTGTTACAATTACTCTAACAATGTTGGTTTTTGAAACCAAATGGAAGTTACAGAAACTATTGTAATAATGCATACTTCATTTATGAAGATCGAGAAATTAAAGAGGCACGTAAGAATGATTGTAATTTTCTCTTGATAATAGAAAACCTTACCTTGCCCATGGATGTTTCCTTGACAAATTGTCAAGGATTTACCACATAAAATCTCTATGTATCATTCATTTTTGTCATTATTTCTCTATCATTGAATGCTTGAACAAACCAGAATACCAACAATATCAACAATCTCTTTATCATCCCAACATGAAATGCTTATGTTTCTTGATTTTGAGGCTTCTTCTAAGTGTGTGGACCCGCTTACCAAACTTGTTGATTTTTGTTGAAAATTGTAGCAAGAGGTGGTCTTTTGGCTCGTGCTTAGCCAGAAAGACCGAGTTTGTCTTTCCTTTGACCATGGACAAGTTCATGGAGTTGGTAAATTCATGTGTAGTGTAGGAGGACCAGTTATGAGGACCCTTCATTTAGTTTGACTATAGATCGAGTGGTAGTTGTAAATTTATATAGAACGAATTGGGTGCTTCAGTCCTAATTGAAGCATGGACAAGTTAAACAAGCAGTTGACTTAATTAAGTAGTCAATATCAACTCATGTTCTAAATTTGCACTTGCCAAATATAGCTAGATCGAATCAATAAAAAGAGGACGAAGGCATGAGTTTATTATAATTGTTTTGTGCACAAAGGTTTGTGACAAGACAAAGCTCATGAGTTTGGGAGAGAGAGCCTTGATTATGGAGCGCAGGAATTGTGTCCAAAGGAATAAGAGATCACAGATGAGCAAGAATTTAGGAGATTGATGGTGCACAAAATTAAGGAGCTTATGTGCTAAGATTTGGCAGGCCAAAAGTGTGCATGGATTTGCGCAAGGAATAAGGGCTTCTAATGTGCAAGAGAATAAGAGTTGGAATCAAGCAAGATGTGGGGGAAGTCAAGGATTCAATAGGGGATAGTTGTGTGCAGGAACCAAGATCAAGTAGTGATCAAGGTAGGCCCAGATCAAGTAGTGATCAAGGCAAGCCGAGATCAACTATATCCGTTGAGATTTGTGAGAGAAGCAGAACGCTTTCTCAAAGAGACAGATTGCTTTGTAATAGATTCAAATGCTCCAAGGCAATCAATAAAATAGCCACATCAAGCAAGCAGGTTTTCCCTATTGGGTTTTCTAAGAAAACCCTGTCAATTTGTGCATGTGTTTTTATCTCTCTGTTTTTATTCTGTTGCATATGATTTGTTAAGAGACTTTGTATCTTGGTGAAAGTAAACTAGTTTCAGTTTTCAATTATTCATTTAAGTAGTTGCAGAGTTTCGTGGAAATTTAACATGGTATGAAAGTAGGGATCAGTATAAAGACTAGCACTAGATTGATTAGTTAGTAGATAGCGCATATCAAGCAAAAGGCTTGGGCTAGAGTTTTGAAGAGAAGGCTTTTTTTTCAATGGCAGATTTGTTTTGAGTTGAAAAAAATATCGATTC

Fln Alignment:

CL4048Contig1___INAEYAGDLAKRRSTSTYAFTLAGRARAISWM*KLNETVALSTTKAKYKFVSHACKEEI*LKGLLGDYVRMQNNVTVFCDSQSAIYLVTYPIHHSKTKHID
Q9M5J7_______________VDADWVGDLDHIRSTSGYVFNLFGGA--ISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQSAIFMAKNPAYDSKTNHID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain