SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37925

Length: 3299 nt

UniGene Fasta

>sp_v3.0_unigene37925
ACTGTGCTGAGGCATTCCCCTGATCAGATAAGAACTATCTTAGGTATTTAGGTAAACTGTTTCTGTGACTTGCTCTCTAAAAGAAAGGAAAATGACGTTGTCTACGTTATCTTTATAATGAATAGGTGAATAGGTTCGAGACGAAGTTTGGGAGGGCAGTCTCAAAGTAATTTGTGTATTTTCAGTGTATCTCATGGTGGTGTGGAAATCAAGCCAGGAGTTTCTTTGCCTTCAACTAATCCTGCTCATCCTCTCCTGCCCCATTCCCAAAGATGGCTGCACCCAGATCATCCGCTAAATTGGCTGCACTTTTGGCAATACTGCTCATAGTTGGGGCAGCGCAGGCTCAAGATTGCTCAAATGCCATGGACAAATTGGCTCCATGCACTTCAGCAGTGGGACTGTCTAGCAATGGAGTGAAGCCTGGACAAATTGGCTCCATGCACTTCAGCAGTGGGACTGTCTAGCAATGGAGTGAAGCCGATGCCCTCAAAGGAACCGAGAGCAGTGATATCACTTCCTGCTAAATGCAATCTCCCTGAAGGCTCTCTGTTATGGCGATTCTCAGATCGTGGATCTCTTTAAGATTTTCAGCAACCAAGTGATAGAATAAATTCTCAGATTTTGAGATATCTATATAGCGATTTTCAGTATCGGATTGTCTACAGTACTCATATATTATTTAAGTGATTGGATAAAATTCTCGGATTCCGAGTTAGAAATACAGACACAATGAATGTTGCTGGATCGGAATGTTTTAATTTCGAGAATGATTATAAATAATAAATAATTGATTTCCTCGTGCCGAATTCGGCACGAGGGGGTTACGGAGGAGGGCCAGGTTATGGAGGAGGATCGGGTTACGGGGGTTCCCGTGGCAGTGGTCGCGGCCGCGGAGGCAGTTGGAATAGCAGATCTGGTGGTTGGGACAGGAAGGAACGAGAAGTAAATCCTTTTGATGACGATGATGAATCCGTTCCAGGTGCTTCGGCAGAACAGGAAAACAGTGCCATAAATTTTGATGCTTATGATGATATCCCTGTTGACACTAGTGGTGACAATGTTCCCCCTCCTGTAACTACATTTCAAGAAATAGACTTGGGAGAGGCACTTAATATGAATATCAAGAGGTGCAAGTTTGTCAAGCCGACTCCTGTGCAGCGGTATGCTATTCCGATTTCTCTTGCAGGACGGGATCTCATGGCGTGTGCGCAGACGGGTTCCGGTAAAACTGCAGCCTTCTGTTTCCCTATAATTGCAGGAATTATGAGGGGTCAGATTCCTCAGCGTCCCCGCGGGGCACGGACAGCATTGCCGCTGGCACTTATTCTTTCTCCAACAAGAGAATTATCATGTCAAATACACGAAGAAGCTAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTGGTTGCTTATGGGGGTGCACCGATTCATCAACAGCTGCGAGACCTAGAGAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGTCTGGTGGATCTTCTTGAGAGAGCAAGAGTGTCACTGTCTGTGGTACAGTACCTGGCTCTAGATGAGGCTGATCGTATGCTTGACATGGGTTTTGAGCCTCAAATCCGTAAAATAGTTCAACAGATGGACATGCCTAAACCAGGCCAGAGGCAGACCATGCTTTTCAGTGCCACATTTCCAAGGGAGATCCAGAGGCTGGCTGCAGATTTTCTCTCAAATTATATTTTCCTGGCTGTTGGAAGGGTTGGGTCAAGCACAGATCTTATTGTGCAGAGGGTTGAGTTTGTACATGAAGCTGATAAGAGAAGCCACTTAATGGATCTTCTTCATGCACAAAAAGATAATGGAACACATGGCAAGCATTCTCTAACGTTGGTCTTTGTGGAAACAAAGAAGGGAGCTGATTCATTAGAATACTGGTTGTGTAACAATGGGTTTCCTGCAACAACTATTCATGGAGACAGAACCCAACAGGAACGAGAACAAGCATTGAGGTCTTTCAAGAGTGGGTTAACTCCAATTCTCGTTGCTACAGATGTTGCTGCTCGTGGACTTGATATCCCACATGTTTCTCATGTCGTTAATTTTGATTTGCCAAATGATATTGATGATTATGTGCATCGCATAGGTCGTACAGGTCGTGCTGGTAAATCAGGATTGGCTACTGCTTTTTTCAATGAAGGTAATTCCAACATAGCTAGGTCTCTTGCTGAACTTATGCAAGAGTCCAACCAAGAGGTACCTCAATGGTTGTCAGTTTATGCTACGAGATCATCATTTGGAGGCAAAAATCGTCGTAGTGGTGGAGGCAGGTTTGGGGGCCGTGATTATCGAAGAGAAGGAAGCAGGGGAGGGGGTGATTATCATGGAGGTGCACATGGAAACGTGGGAAATTCTTATGGAAATACGAGAAATTCCTATGGATCTGCTGCAGGATATGGTGGACATGGCCCCGAGGTTGCCAGTGCATGGGATTGAATTGATTTCATGTGTTATTGAATTCCTTTATATGTTGTTGCACAGGTCTAGGGTCAATAGAAAAATGGTGCTGACATTTTTGCATTAAAAATGCACTTGGATTTATGCATATTATTTTCTCTTAACAAAAGCTGCCACCACCGCTGCCGAAGTTGAGTAGAGTAAATTACACTGGGTTTTGTAATACCCAAAGAAATATATTATCTTGACCAACTAACGAATAGATAGCAAATAGAGTACGACCATTCTTGGCTTCTGGAGTCTGGTGTACATTAGTAGAAAACACCTGGCAATTTGTGGGTTATAGGCCAGCTTGGAGAGCTTGATGCAAGTGTAACTTCGTCATTCAATTCTTGCATGTCAGCTGAAATTTCAGACAGCTGCTGTTTCTGTGGGTGATTGTTTCAGCGAACAAATATATCTGGTCTGTATCACCTTGTTGCTTTACGCCCTCTTAGTCTTCCTGTGAGGGTAAATACCTGATGTGCAGGAACGACAGTCACTAACACAATTTCAAAATGTTCTGGTCTGTATCACCTTGTTTATGCCCTCTTAAATCTTCCTGTGAGGGTAAAATACCCGATGTGCAGGAATGAGAGTCACTGTCATGCTCACCAACGTAACCTCAAATTCGTTATATATTTGTGCTTGGAACAACTTGAATCTTAATATTTGGTCTTTTCTTGGTAAGAAATCGATCCAATTTCGCTCTGTGCAGCTTTCTATGTAGCTCTTGCCGGTTATTTTGTACATAAGACAGAGAACCTTAGCTCGCAAATTTCTTTGGGAAATATAATTTATTTTTAACGTACAGTAAATGGTGCATA

Ace file of the UniGene sp_v3.0_unigene37925

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SYU7_RICCO	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	-

Source	Gene names
Sma3	RCOM_0041090;

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:17705382-17708744 FORWARD LENGTH=633	82%
RefSeq	Arabidopsis thaliana	NP_181780.1	DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002297644.1	predicted protein, partial [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 562 - 593

Fln protein: IIDFLVPNSARGGYGGGPGYGGGSGYGGSRGSGRGRGGSWNSRSGGWDRKEREVNPFDDDDESVPGASAEQENSAINFDAYDDIPVDTSGDNVPPPVTTFQEIDLGEALNMNIKRCKFVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGIMRGQIPQRPRGARTALPLALILSPTRELSCQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRDLERGVDILVATPGRLVDLLERARVSLSVVQYLALDEADRMLDMGFEPQIRKIVQQMDMPKPGQRQTMLFSATFPREIQRLAADFLSNYIFLAVGRVGSSTDLIVQRVEFVHEADKRSHLMDLLHAQKDNGTHGKHSLTLVFVETKKGADSLEYWLCNNGFPATTIHGDRTQQEREQALRSFKSGLTPILVATDVAARGLDIPHVSHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNSNIARSLAELMQESNQEVPQWLSVYATRSSFGGKNRRSGGGRFGGRDYRREGSRGGGDYHGGAHGNVGNSYGNTRNSYGSAAGYGGHGPEVASAWD*

Protein Length: 563

Fln nts: ACTGTGCTGAGGCATTCCCCTGATCAGATAAGAACTATCTTAGGTATTTAGGTAAACTGTTTCTGTGACTTGCTCTCTAAAAGAAAGGAAAATGACGTTGTCTACGTTATCTTTATAATGAATAGGTGAATAGGTTCGAGACGAAGTTTGGGAGGGCAGTCTCAAAGTAATTTGTGTATTTTCAGTGTATCTCATGGTGGTGTGGAAATCAAGCCAGGAGTTTCTTTGCCTTCAACTAATCCTGCTCATCCTCTCCTGCCCCATTCCCAAAGATGGCTGCACCCAGATCATCCGCTAAATTGGCTGCACTTTTGGCAATACTGCTCATAGTTGGGGCAGCGCAGGCTCAAGATTGCTCAAATGCCATGGACAAATTGGCTCCATGCACTTCAGCAGTGGGACTGTCTAGCAATGGAGTGAAGCCTGGACAAATTGGCTCCATGCACTTCAGCAGTGGGACTGTCTAGCAATGGAGTGAAGCCGATGCCCTCAAAGGAACCGAGAGCAGTGATATCACTTCCTGCTAAATGCAATCTCCCTGAAGGCTCTCTGTTATGGCGATTCTCAGATCGTGGATCTCTTTAAGATTTTCAGCAACCAAGTGATAGAATAAATTCTCAGATTTTGAGATATCTATATAGCGATTTTCAGTATCGGATTGTCTACAGTACTCATATATTATTTAAGTGATTGGATAAAATTCTCGGATTCCGAGTTAGAAATACAGACACAATGAATGTTGCTGGATCGGAATGTTTTAATTTCGAGAATGATTATAAATAATAAATAATTGATTTCCTCGTGCCGAATTCGGCACGAGGGGGTTACGGAGGAGGGCCAGGTTATGGAGGAGGATCGGGTTACGGGGGTTCCCGTGGCAGTGGTCGCGGCCGCGGAGGCAGTTGGAATAGCAGATCTGGTGGTTGGGACAGGAAGGAACGAGAAGTAAATCCTTTTGATGACGATGATGAATCCGTTCCAGGTGCTTCGGCAGAACAGGAAAACAGTGCCATAAATTTTGATGCTTATGATGATATCCCTGTTGACACTAGTGGTGACAATGTTCCCCCTCCTGTAACTACATTTCAAGAAATAGACTTGGGAGAGGCACTTAATATGAATATCAAGAGGTGCAAGTTTGTCAAGCCGACTCCTGTGCAGCGGTATGCTATTCCGATTTCTCTTGCAGGACGGGATCTCATGGCGTGTGCGCAGACGGGTTCCGGTAAAACTGCAGCCTTCTGTTTCCCTATAATTGCAGGAATTATGAGGGGTCAGATTCCTCAGCGTCCCCGCGGGGCACGGACAGCATTGCCGCTGGCACTTATTCTTTCTCCAACAAGAGAATTATCATGTCAAATACACGAAGAAGCTAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTGGTTGCTTATGGGGGTGCACCGATTCATCAACAGCTGCGAGACCTAGAGAGGGGTGTTGACATTCTTGTTGCAACTCCTGGACGTCTGGTGGATCTTCTTGAGAGAGCAAGAGTGTCACTGTCTGTGGTACAGTACCTGGCTCTAGATGAGGCTGATCGTATGCTTGACATGGGTTTTGAGCCTCAAATCCGTAAAATAGTTCAACAGATGGACATGCCTAAACCAGGCCAGAGGCAGACCATGCTTTTCAGTGCCACATTTCCAAGGGAGATCCAGAGGCTGGCTGCAGATTTTCTCTCAAATTATATTTTCCTGGCTGTTGGAAGGGTTGGGTCAAGCACAGATCTTATTGTGCAGAGGGTTGAGTTTGTACATGAAGCTGATAAGAGAAGCCACTTAATGGATCTTCTTCATGCACAAAAAGATAATGGAACACATGGCAAGCATTCTCTAACGTTGGTCTTTGTGGAAACAAAGAAGGGAGCTGATTCATTAGAATACTGGTTGTGTAACAATGGGTTTCCTGCAACAACTATTCATGGAGACAGAACCCAACAGGAACGAGAACAAGCATTGAGGTCTTTCAAGAGTGGGTTAACTCCAATTCTCGTTGCTACAGATGTTGCTGCTCGTGGACTTGATATCCCACATGTTTCTCATGTCGTTAATTTTGATTTGCCAAATGATATTGATGATTATGTGCATCGCATAGGTCGTACAGGTCGTGCTGGTAAATCAGGATTGGCTACTGCTTTTTTCAATGAAGGTAATTCCAACATAGCTAGGTCTCTTGCTGAACTTATGCAAGAGTCCAACCAAGAGGTACCTCAATGGTTGTCAGTTTATGCTACGAGATCATCATTTGGAGGCAAAAATCGTCGTAGTGGTGGAGGCAGGTTTGGGGGCCGTGATTATCGAAGAGAAGGAAGCAGGGGAGGGGGTGATTATCATGGAGGTGCACATGGAAACGTGGGAAATTCTTATGGAAATACGAGAAATTCCTATGGATCTGCTGCAGGATATGGTGGACATGGCCCCGAGGTTGCCAGTGCATGGGATTGA___ATTGATTTCATGTGTTATTGAATTCCTTTATATGTTGTTGCACAGGTCTAGGGTCAATAGAAAAATGGTGCTGACATTTTTGCATTAAAAATGCACTTGGATTTATGCATATTATTTTCTCTTAACAAAAGCTGCCACCACCGCTGCCGAAGTTGAGTAGAGTAAATTACACTGGGTTTTGTAATACCCAAAGAAATATATTATCTTGACCAACTAACGAATAGATAGCAAATAGAGTACGACCATTCTTGGCTTCTGGAGTCTGGTGTACATTAGTAGAAAACACCTGGCAATTTGTGGGTTATAGGCCAGCTTGGAGAGCTTGATGCAAGTGTAACTTCGTCATTCAATTCTTGCATGTCAGCTGAAATTTCAGACAGCTGCTGTTTCTGTGGGTGATTGTTTCAGCGAACAAATATATCTGGTCTGTATCACCTTGTTGCTTTACGCCCTCTTAGTCTTCCTGTGAGGGTAAATACCTGATGTGCAGGAACGACAGTCACTAACACAATTTCAAAATGTTCTGGTCTGTATCACCTTGTTTATGCCCTCTTAAATCTTCCTGTGAGGGTAAAATACCCGATGTGCAGGAATGAGAGTCACTGTCATGCTCACCAACGTAACCTCAAATTCGTTATATATTTGTGCTTGGAACAACTTGAATCTTAATATTTGGTCTTTTCTTGGTAAGAAATCGATCCAATTTCGCTCTGTGCAGCTTTCTATGTAGCTCTTGCCGGTTATTTTGTACATAAGACAGAGAACCTTAGCTCGCAAATTTCTTTGGGAAATATAATTTATTTTTAACGTACAGTAAATGGTGCATA

Fln Alignment:

Contig37925___VDTSGDNVPPPVTTFQEIDLGEALNMNIKRCKFVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIIAGIMRGQIPQRPRGARTALPLALILSPTRELSCQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRDLERGVDILVATPGRLVDLLERARVSLSVVQYLALDEADRMLDMGFEPQIRKIVQQMDMPKPGQRQTMLFSATFPREIQRLAADFLSNYIFLAVGRVG-SSTDLIVQRVEFVHEADKRSHLMDLLHAQKDNGTHGKHSLTLVFVETKKGADSLEYWLCNNGFPATTIHGDRTQQEREQALRSFKSGLTPILVATDVAARGLDIPHVSHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNSNIARSLAELMQESNQEV
C0PQ26_______________ITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIV-----HINAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQI---RP-DRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDG------SRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRV

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
277		94		5	1.0
288		1		98	0.999926
293	1	98			0.999926
334		6	93		1.0
358	0	99			0.999821
382		98		0	0.999998
398	0		98	0	1.0
405		0		98	0.999999
598		86	13		0.999973
672		22		77	1.0
755			66	33	0.997452
756			33	66	0.997452
1320	11		88		0.923564
1424			88	11	0.923564
1425			11	88	0.923564
1621		16	83		0.994512
1622	83			16	0.994512
1623		83		16	0.994512
1803		85		14	0.993533
1888	87		12		0.992554
1906		10	90		0.90298
1908	90			10	0.90298
1912			11	88	0.923564
2058	84	15			0.999986
2061		15		84	0.999986
2062	16		83		0.999991
2499		9		90	0.999842
2545	9		90		0.999842
2615	10		90		0.90298
2912		4		95	0.999975
3071	80		20		0.995493
3073		80		20	0.995493
3184	86			5	0.999998
3185	85		5	8	0.999999
3186	81	3	9	6	0.999999
3187	80			12	1.0
3189	66	33			1.0
3191	66		33		1.0
3192	64	35			1.0
3193	16			83	0.994512
3200	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain