SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37631

Length: 1003 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37631 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp\|Q9ZVX1.1\|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb\|AAC64223.1\| putative ubiquitin-conjugating enzyme [Arabidop	-	-	8.0e-35	41%
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	Gene names
Sma3	POPTRDRAFT_859165; RCOM_0978050;

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
480		33		66	0.997452
689		66		33	0.997452
769			25	75	0.996473
836		25	75		0.996473
845	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
70	83	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain