SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37536

Length: 1605 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene37536 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	ATP-dependent DNA helicase, RecQ family protein, expressed	-	-	1.765e-11	-

Source	Gene names
Sma3	At1g31360; CHLREDRAFT_128016; CHLREDRAFT_170922; GSVIVT00007632001; GSVIVT00035462001; LOC_Os11g48090; Os11g0708600; OsRecQ2; PHATRDRAFT_14845; PHYPADRAFT_1048; PHYPADRAFT_132154; POPTRDRAFT_757280; RCOM_0865580; RCOM_1027520; recQl2;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	four-way junction helicase activity	GO:0009378	Molecular Function	-
Sma3	3'-5' DNA helicase activity	GO:0043138	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018329	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31360.1	RECQL2, ATRECQ2, MED34 RECQ helicase L2 chr1:11232422-11237412 FORWARD LENGTH=705	56%
RefSeq	Arabidopsis thaliana	NP_001077639.1	ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002304389.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg:

Fln protein: IALTATATQRVQTDLKEMLQVSRCVTFVSSVNRPNLFYEVREKSLGAMAVIDDIANFIRGSYQNKESGIVYCFTRKECEQVAKELRQRGISAEHYHADMDVKARESVHLRWSTNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPSHCLLYFRPADLPRQSSMVFYEHAGLENLYAIARFCQSKSRCRRVAFFGHFGESLQECNGMCDNCSFPKEIKHIDVTPHARSLVSLVNEIQNNDQRATLLQLVDNWKTKCRQAGTNASTKDLAKDMKKEDVEQLIIQLILNGMLEEEFQHTAYATNAYIVRGPLSKGLLQGQRVVKLEMIQGPKVDSQTAKKGAFLDNKNMHSGLALILDELRKELSQKHGGIFPHAVLSSQHITMLCTQQPTSMEEVEKVLGKRKAEQYGKEILDCIQRYISQGPQSTSGQWVSPKKQKQTGNEKNRNNAGDGKRGKAKRAFVCVSSSDNESEDLYETKDDDDFEISTIKRSKKA*

Protein Length: 510

Fln nts: GATTGCATTAACGGCTACTGCCACTCAACGGGTTCAGACAGATTTGAAAGAGATGTTGCAAGTTTCCAGGTGTGTTACATTTGTGAGTAGTGTGAACAGGCCGAACCTTTTTTATGAGGTCCGTGAGAAGTCTTTGGGTGCCATGGCAGTCATCGATGATATAGCAAATTTTATACGTGGATCTTACCAAAACAAGGAGTCTGGAATTGTCTACTGCTTTACACGAAAAGAATGTGAACAGGTTGCTAAGGAATTGCGGCAGCGTGGTATATCGGCAGAACATTATCATGCAGATATGGATGTTAAGGCTCGTGAAAGTGTTCATCTTCGTTGGAGTACAAACAAGTTACAAGTTATAGTAGGCACGGTTGCATTTGGCATGGGTATTAACAAGCCAGATGTTAGATTTGTCATTCACCACAGTCTTAGCAAATCATTGGAAACATATTATCAGGAAAGTGGCCGAGCAGGTCGTGATGGCCTTCCATCACATTGTTTACTATACTTCAGGCCAGCTGATCTTCCTCGACAGAGTTCGATGGTCTTCTATGAGCATGCTGGCTTGGAAAATCTTTATGCCATTGCTCGTTTTTGTCAGTCAAAGAGTAGGTGCCGCCGCGTAGCATTTTTTGGTCACTTTGGGGAGTCATTACAGGAATGCAATGGAATGTGTGATAACTGTTCTTTTCCGAAGGAGATAAAGCATATTGATGTCACTCCTCATGCAAGGTCTCTGGTATCCTTGGTGAATGAAATTCAAAATAATGACCAACGGGCTACTTTGCTGCAATTGGTTGATAACTGGAAGACAAAGTGCCGACAAGCAGGGACAAATGCATCTACAAAAGATCTCGCCAAAGATATGAAGAAAGAGGATGTAGAGCAATTGATTATCCAGCTTATATTAAATGGAATGTTGGAAGAAGAGTTCCAACATACAGCATATGCCACAAATGCATACATTGTACGTGGACCATTATCAAAGGGGTTGCTACAAGGACAAAGGGTGGTGAAGTTGGAGATGATTCAAGGACCGAAGGTTGACAGTCAAACTGCTAAGAAGGGAGCATTTCTTGATAATAAGAATATGCATTCTGGTTTGGCACTTATTCTTGATGAGCTCCGCAAGGAACTTTCTCAAAAGCATGGGGGCATATTCCCTCATGCTGTGTTGTCCTCGCAACATATTACTATGTTATGTACTCAACAACCAACCTCAATGGAAGAGGTGGAGAAAGTGCTAGGGAAAAGAAAAGCGGAGCAGTATGGAAAGGAAATCCTTGATTGTATTCAACGGTATATATCCCAGGGCCCTCAAAGCACATCAGGACAATGGGTTTCACCAAAAAAACAAAAACAGACTGGGAATGAGAAGAATCGTAACAATGCTGGAGATGGGAAAAGAGGGAAAGCCAAGAGAGCTTTTGTGTGTGTATCTAGTAGTGATAATGAGTCAGAAGACCTATATGAAACCAAAGATGACGACGACTTTGAAATCTCCACCATTAAAAGATCAAAAAAGGCATAA___GCAGTCCATAATCCTTGAAGGGGGATCATGACCTGACATTGGCTTTGACATAAACATAAGCTCCCAATGGCTGCTTA

Fln Alignment:

Contig37536___IVYCFTRKECEQVAKELRQRGISAEHYHADMDVKARESVHLRWSTNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPSHCLLYFRPAD
B8LKZ7_______________LIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAAN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1082			75	25	0.996473
1150	20	80			0.995493
1152			20	80	0.995493
1253		12		87	0.992554
1260		28		71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain