SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37310

Length: 883 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene37310

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase n=2 Tax=Salvia miltiorrhiza RepID=E6Y426_SALMI	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase	-	-	1.2e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Shikimate O-hydroxycinnamoyltransferase.	EC:2.3.1.133	-	6.648e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940		6.648e-27	%
Sma3	Flavonoid biosynthesis	00941		6.648e-27	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		6.648e-27	%
Sma3	Biosynthesis of phenylpropanoids	01061		6.648e-27	%
Sma3	Biosynthesis of secondary metabolites	01110		6.648e-27	%
Sma3	Anthranilate N-benzoyltransferase.	EC:2.3.1.144	-	2.362e-09	-

Source	Gene names
Sma3	AT5G48930; AsHHT1; AsHHT2; AsHHT3; AsHHT4; At5g48930; CtSQHCT4; CtSQHCT6; GSVIVT00025189001; HCQ1; HCQ2; HCQ3; HCQ4; HCQ5; HCQ6; HCQ7; HCT; HCT1A; HCT1B; HCTa; HQT; HQTa; OJ1004_A05.15; OSJNBa0029H02.19; Os02g0611800; Os04g0500700; OsI_08038; OsI_16514; O

Source	GOs	Term	Type	Identity
Sma3		GO:0008415	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	shikimate O-hydroxycinnamoyltransferase activity	GO:0047172	Molecular Function	-
Sma3	quinate O-hydroxycinnamoyltransferase activity	GO:0047205	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	positive regulation of flavonoid biosynthetic process	GO:0009963	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G48930.1	HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase chr5:19836654-19838092 REVERSE LENGTH=433	56%
RefSeq	Arabidopsis thaliana	NP_199704.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002332068.1	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNE0

Fln msg: Overlapping hits, possible frame ERROR between 193 and 162, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 294 - 433

Fln protein: YSYPLLLVQVTFLKCGGVSLGTRIHHILGDGYACLQFFNAWSTVARGTNVMEPxxxxxxxxxxxxNTPNPKFRHIEYEQPSPDKNGKRNDDQDSIGIFKITTDQLDNLKAKAIHEDGNEVKYTTYETLSGHIWRCVCKATNLNEDQESKMYVAVDSRKRLQPPLPLNYFGNAIFTASPMAVAGDLTSKPLYYAASIIHEALVRMDDEYLHSALDYLESHPDLNALIRGSHTFRSPNLCINSWSRLPLHDADFGWGKPIYMGPAIIAFENTIYILSNPVNDGSLTLAVRLRADHM

Protein Length: 295

Fln nts: TTATTCCTATCCTCTCCTCCTTGTTCAGGTAACATTTCTCAAATGTGGCGGAGTATCATTAGGTACGAGGATACACCACATTCTGGGCGATGGATATGCATGTTTGCAATTTTTCAATGCTTGGTCAACTGTAGCCCGTGGAACCAATGTTATGGAACCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATACTCCCAATCCAAAGTTTCGACATATAGAGTATGAACAACCTTCACCAGACAAAAATGGTAAAAGAAATGATGATCAAGACTCAATTGGTATCTTTAAAATTACAACAGACCAATTAGATAACCTTAAGGCCAAGGCCATACATGAGGATGGCAATGAGGTAAAATATACTACTTATGAAACGCTATCTGGACACATTTGGAGATGCGTTTGTAAGGCTACAAATCTCAATGAAGATCAAGAAAGCAAAATGTATGTTGCTGTAGACAGCCGTAAGCGACTGCAGCCACCTCTTCCCCTTAATTATTTTGGAAATGCCATTTTTACTGCTTCGCCTATGGCAGTCGCAGGGGACCTAACCTCGAAGCCTCTATATTACGCTGCAAGTATCATTCACGAAGCTTTGGTCCGGATGGATGACGAATACCTGCACTCCGCTTTAGACTATTTGGAATCACACCCTGATTTGAATGCTTTAATTCGAGGATCTCATACATTCAGGTCTCCTAATCTTTGTATCAATTCTTGGTCTCGGCTGCCTCTTCACGATGCAGATTTTGGTTGGGGAAAGCCAATTTATATGGGTCCGGCCATCATTGCTTTTGAAAACACAATTTATATTTTGTCTAATCCTGTCAATGATGGAAGTTTGACACTTGCAGTTAGATTGCGGGCAGACCATATGGA

Fln Alignment:

Contig37310___SYPLLLVQVTFLKCGGVSLGTRIHHILGDGYACLQFFNAWSTVARGTNVMEPxxxxxxxxxxxNTPNPKFRHIEYEQPSPDK------NGKRNDDQDSIGIFKITTDQLDNLKAKAIHEDGNEVKYTTYETLSGHIWRCVCKATNLNEDQESKMYVAVDSRKRLQPPLPLNYFGNAIFTASPMAVAGDLTSKPLYYAASIIHEALVRMDDEYLHSALDYLESHPDLNALIRGSHTFRSPNLCINSWSRLPLHDADFGWGKPIYMGPAIIAFENTIYILSNPVNDGSLTLAVRLRADHM
B8LNE0_______________SYALLVLQVTFFKCGGVSLGVGMQHHVADGYAGLHFINTWSDVARGLDIALPxxxxxxxxxxxNPPTPKFQHIEYQQPPPLKDTSGIMNGEKNDF--SVAIFKLTKEQLDILKGKA-RENGNKVSYSSYEMLSGHIWRCACKARNLTEDQGTKLYIATDGRSRLRPSLPPGYFGNVIFTTTPMAVAGDIVSKPTYYAASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFGWGRPIFMGPGGIAYEGLAFILPSSAKDGSLSVALGLQPDHM

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
599	10			90	0.90298
710	14			85	0.993533
711		14		85	0.993533
712	14		85		0.993533
714	85			14	0.993533
729		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain