SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37272

Length: 547 nt

UniGene Fasta

>sp_v3.0_unigene37272
TCCTGACGATAGAAGGTTTGGTTATGATAACATGGGAGGATATGATAGAAGTGGAATGGGAGGAAGATCTGGATATGTTGATGAAAGACTCCACAGTCGGCACTTAGGACGTGCATCTGGTGGCTTCCAAGACTGGCCAGGCTCTGGACGTGCTGGCTTTGGTGAGATGGGCACCCCTCAGCGGGAAGGGTTAATGACTTATAAACAATTTATTGCTGAACTTGAGGATGACATATCACCAGCTGAAGCAGAGCGCAGGTACCAGGAATACAGAACAGAATATATCAGCACGCAGAAGCGTGCATTTTTTGAAGCTCACAAAGATGAGGATTGGCTGAAGGATAAATATGACCCATCACACCTAGAAGCTGTCATACAAAGGAGAAATGAAAACGCAAAAGCAACAGCAAAGGAGTTCCTTTTAGACCTACAGAATGGAACCCTAGACATAGGTCCAAGTTCGACTGGTTCTATACCATTAACTGCAAAAGGTGGTCAAGGGAGTGACCACAATTCAGATGATGATGGTGAGGTTAGTGGCAAAAGG

Ace file of the UniGene sp_v3.0_unigene37272

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3546 domain containing protein	-	-	4.0e-31	41%
FL-Next	sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Sma3	C2H2 zinc-finger protein	-	-	2.953e-09	-

Source	Gene names
Sma3	At2g27100; GSVIVT00017374001; GSVIVT00033932001; Os02g0149600; Os08g0517300; OsI_05859; OsI_24338; OsI_29889; OsJ_05384; OsJ_22514; OsJ_27936; P0479D12.33; P0545E05.35; P0686C03.151; P0700D12.110; PHYPADRAFT_124567; PHYPADRAFT_133793; POPTRDRAFT_648998; P

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	primary miRNA processing	GO:0031053	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27100.1	SE C2H2 zinc-finger protein SERRATE (SE) chr2:11572587-11576357 FORWARD LENGTH=720	0.0	61%
RefSeq	Arabidopsis thaliana	NP_565635.1	serrate RNA effector molecule [Arabidopsis thaliana]	0.0	61%
RefSeq	Populus trichocarpa	XP_002312846.1	predicted protein [Populus trichocarpa]	2.0e-25	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVD0

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 182 - 720

Fln protein: PDDRRFGYDNMGGYDRSGMGGRSGYVDERLHSRHLGRASGGFQDWPGSGRAGFGEMGTPQREGLMTYKQFIAELEDDISPAEAERRYQEYRTEYISTQKRAFFEAHKDEDWLKDKYDPSHLEAVIQRRNENAKATAKEFLLDLQNGTLDIGPSSTGSIPLTAKGGQGSDHNSDDDGEVSGKR

Protein Length: 183

Fln nts: TCCTGACGATAGAAGGTTTGGTTATGATAACATGGGAGGATATGATAGAAGTGGAATGGGAGGAAGATCTGGATATGTTGATGAAAGACTCCACAGTCGGCACTTAGGACGTGCATCTGGTGGCTTCCAAGACTGGCCAGGCTCTGGACGTGCTGGCTTTGGTGAGATGGGCACCCCTCAGCGGGAAGGGTTAATGACTTATAAACAATTTATTGCTGAACTTGAGGATGACATATCACCAGCTGAAGCAGAGCGCAGGTACCAGGAATACAGAACAGAATATATCAGCACGCAGAAGCGTGCATTTTTTGAAGCTCACAAAGATGAGGATTGGCTGAAGGATAAATATGACCCATCACACCTAGAAGCTGTCATACAAAGGAGAAATGAAAACGCAAAAGCAACAGCAAAGGAGTTCCTTTTAGACCTACAGAATGGAACCCTAGACATAGGTCCAAGTTCGACTGGTTCTATACCATTAACTGCAAAAGGTGGTCAAGGGAGTGACCACAATTCAGATGATGATGGTGAGGTTAGTGGCAAAAGG

Fln Alignment:

Contig37272___PDDRRFGYDNMGGYDRSGMGGRSGYVDERLHSRHLGRASGGFQDWPGSGRAGFGEM---GTPQREGLMTYKQFIAELEDDISPAEAERRYQEYRTEYISTQKRAFFEAHKDEDWLKDKYDPSHLEAVIQRRNENAKATAKEFLLDLQNGTLDIGPSSTGSIPLTAKGGQGSDHNSDDDGEVSGKR
Q9ZVD0_______________PPDRRFGYDHGGGYDRE-MGGRPGYGDERPHGRFMGR----YQDWEG-GRGGYGDASNSGNPQRDGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSVIERRNDLAQKVAKDFLLDLQSGTLDLGPAVTA----LNKSGRTSEPNSEDEAAGVGKR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
237	20	80			0.995493
239		80	20		0.995493
240		80		20	0.995493
328	20		80		0.995493
331	11			88	0.923564
334			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain