SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37266

Length: 433 nt

UniGene Fasta

>sp_v3.0_unigene37266
CCCGCAGACAGGAAAGAAAGTATCCCACTCTGGCGGAGCTTTTCAGAACGAGGGAGGAGGCTGCGGTGGATGAGCAAATGACGGTGGTGGAATTGAGGGAAGGCCCGATGATGCGCTTTACGAGCCCTGCGCCGCCATTTGTGTTGCGGTTCGAGAATTTAAAATACAGTATTTCTCGGAAGCCGAAGTTAAGATCTTGCTGCTGCGGTGGCGGCAGTCGGAATCGGCTGCAGGCGGCGGATGACATAGAGCATCCGCCCAGGGAGTATGAGAGCAAACCTGTTTTGAAGTGATGTGTCCGGGGAGGCCAGAGACGGCGAGCTTTTCGCCGTGCTGGGGCATAGTGGGTCTGGGAAATCGACCCTGATCGACGCGCTGGCGCACAGGATTTCGAAGGAGAGTTTTGAAGGGGAGCGTGACGCTGAATGGAGAG

Ace file of the UniGene sp_v3.0_unigene37266

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	White-brown-complex ABC transporter family n=2 Tax=Populus trichocarpa RepID=B9ICA5_POPTR	-	-	1.0e-14	75%
FL-Next	sp=ABC transporter G family member 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	33%
Sma3	White-brown-complex ABC transporter family	-	-	7.346e-14	-

Source	Gene names
Sma3	At2g39350; At3g53510; At3g55090; At3g55130; At5g13580; F4P12.210; GSVIVT00023098001; GSVIVT00029505001; LOC_Os03g17350; MSH12.4; NtWBC1; Os03g0281900; Os05g0120000; Os05g0120200; OsI_11044; OsI_18236; OsI_18238; OsJ_10379; OsJ_16923; OsJ_16925; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	vacuolar lumen	GO:0005775	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	vacuolar transport	GO:0007034	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	antibiotic transport	GO:0042891	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pigment precursor permease	IPR005284	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53510.1	ABC-2 type transporter family protein chr3:19837302-19839521 REVERSE LENGTH=739	3.0e-15	65%
RefSeq	Arabidopsis thaliana	NP_190919.1	ABC transporter G family member 20 [Arabidopsis thaliana]	3.0e-15	65%
RefSeq	Populus trichocarpa	XP_002301347.1	white-brown-complex ABC transporter family [Populus trichocarpa]	3.0e-17	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LFG8

Fln msg: Separated hits, possible frame ERROR between 218 and 268, and overlapping frame ERROR between 414 and 404, Distance to subject end: 564 aas, your sequence is shorter than subject: 145 - 739

Fln protein: RRQERKYPTLAELFRTREEAAVDEQMTVVELREGPMMRFTSPAPPFVLRFENLKYSISRKPKLRSCCCGGGxxxxxxxxxxxxxxxxxxMRANLF*SDVSGEARDGELFAVLGHSGSGKSTLIDALAHRISKExxxxxxVTLNGE

Protein Length: 146

Fln nts: CCCGCAGACAGGAAAGAAAGTATCCCACTCTGGCGGAGCTTTTCAGAACGAGGGAGGAGGCTGCGGTGGATGAGCAAATGACGGTGGTGGAATTGAGGGAAGGCCCGATGATGCGCTTTACGAGCCCTGCGCCGCCATTTGTGTTGCGGTTCGAGAATTTAAAATACAGTATTTCTCGGAAGCCGAAGTTAAGATCTTGCTGCTGCGGTGGCGGCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGAGAGCAAACCTGTTTTGAAGTGATGTGTCCGGGGAGGCCAGAGACGGCGAGCTTTTCGCCGTGCTGGGGCATAGTGGGTCTGGGAAATCGACCCTGATCGACGCGCTGGCGCACAGGATTTCGAAGGAGAxxxxxxxxxxxxxxxGCGTGACGCTGAATGGAGAG

Fln Alignment:

Contig37266___TLAELFRTREEAAVDEQMTVVELREG-------PMMRFTSPAPPFVLRFENLKYSISRKPKLRSCCCGGGSxxxxxxxxxxxxxxxxxMRANLF*SDVSGEARDGELFAVLGHSGSGKSTLIDALAHRISKESxxxxVTLNGE
Q9LFG8_______________TLAELLMSVEDEG-DDQSRAMDIAVASNFWSSVPSSRVPSSSP-FVLSFKDLTYSVKIKKKFKPFPCCGNSxxxxxxxxxxxxxxxxxMNTKVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESxxxxITLNGE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
256		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain