SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37211

Length: 2686 nt

UniGene Fasta

>sp_v3.0_unigene37211
TGGTTATGGCTGTTGGAGTGAAGTTCCTGAGAAATCAGGTACTCATGCTATTCTCTCCCATTATTCTTGCTGTTTTCAAGGAAACCTTAGGGCTATAATGTGGGTAGCCAGTACTGAAAAGATCCATTGAACATCTAATGTAGAGAACTTGTAATGGTTGATCTGCCCAATGTGATTTTTTCCATACTTAGTTCAAGTCGTGTTGGTATGGGTGCAGAATACACTGCAAATTGACCTGACATGATCAGTTCATCGGTGTAAAGCCTAAAATTATGTTCAGTACATTACCTATCACATGCTTGCTTTCTCGGCCTCCTCATCCTCATGCCATGTCAATAATAATTTTAAAGTTATCTGAATTCATGTGCTTAGATCTGAATTTGCAGGCATTAATTTGTAGATATTTTGGATAATCAACGTAGACACTATGGCTTTTTTGAGCATTAGCTTCTACTGTAAACAGAATATTGCTGACATTGCTGGCTACTAGAAACAAAAATGCCGGAAGCTTAAAGTGTAGAACGTGGTTTCTCATCGCTTAATATTTGGTTTCATGGCAGGTCTTCAACGTTGTGGAAAGAGCTGCAGATTACGATGGATCAATTATTTGAGACCTGATATCAGGCGGGGTAATTTCAGTCCAAATGAAGAGAAGCTTATCATCCATCTGCATACTATGGTTGGAAACAGGTTGGTTAATTTCATATTTGCTTCCTACTTTGCAGAGTCTTTGGTGATAGCATAGTCATTCTTGTATTCAACATTGAAATTCGCACAATTATAGTGATAACATTCTCGTTCTCTCTGAAAAAACATCTCTTTCTTTTGTTCTTGCATTCAACATTGGGCTGCCTCAGCCTAACTGAAAGAAAAACACTTTCTATCATTCTAAAACACTTTCTGTCATTCTATTTGTTCTGGGCAGTGCATTAATAAATTAAATATGCGCAGGTGGGCATACATAGCATCCCATTTACCTGGAAGAACAGATAATGAGATCAAAAACTACTGGAACTCTTGGATAAAGAAAAAGCTTGCTAAGGCTGAAATAATCTCAAAGAATATTGAGGCTTCCAAAGTACATAATAATCTGCCCCAGTTCTTGTTCGAAGAATCTGCAATTCTGGGCAATGAAAGCAAGCTGCTAAAGCCTGAGATGAATACTGATGGGCATGCAGCTCCTCAGAGCCATGTTCTCCCTTCAAAGGAAAATTGTGAAACATTTCCTTTATGGGATTATAAGATGATCAATCATTCAACCACAAGGAATTCTCAATATGAGATGGAAGACAGCAAAACTGCTCTTACCATCGATAGCCTTCTAATTCGCACGGATTCAGAAACAGGAGCTATTAGAGAATTCAATACTTGGGATCCTTCTGGAATTCTGACTAACTCTAGCAGCAAAAACTGCAAAAACAGTGATTTCCAATATATATTACATCGGGACAATGGTCAGCAGGTTCAAGGACTTCCAGTTTCAAATACATGGCATGGCTACAGTAGCTTGAACCCAATTGAAGGGTCCTTTTATTACAATCCAAATTCAGAAAGCAGTAATGGAGTTCACACAACATCTTCTATAAATGAGAGTGACTTCATGAGATCGCTGGATATGGGGCCATTAATTTATTCTCATCATGAAACACTGGATCCTGCTGATCATGCTAACGTAGCTACAATGTGGGAATCGGGTTCCAGCTCTAATGGGGTTGATTTAGGTTATTCCGAGTGCCTATACAGTGGTGAACAATACAACCATGGCACTGAAAACAGTTGCAGCTATTTGCCTCCACTCTATGATGTCAGTGAAGAATCTGCAGCCATTGATATAAAACACAGTGGCAACAATTCACTGAGATATCTGGAACAAATCCAAAATAATGAGATCAATATATCCCAAGAAATGGATGCCATTCAGCAAATATTTGAGCAAAATTCAAACCTAGTTACAACAATTCATTATTGCTTGGGATCTCATTCTCCAGTGTCAGATTCTCATCATCATCACCATCGTCCTCAAGATGCTTTTGATTGATCTCAATCGTCACCACAGACTTCAGATCAGCTCTTCATCTCTCAGAGCGTAGAGCTGCTGGTAGTACTTTTACTGGTTTGTTTTGGGTATTCTAGGTTTTTTACTGTCTCAACATACGTTCAACCAACTGTCCAGACTACGTACACGTTATTCATGATTTACTGGACCCTGCATACCTAATCACTGCATGGTATTTACCTCTTTAAACCTTGTTCTATAAGGATGCCATTTTCCCTTTGTTCAACTATTACCAAATTGATTTATTCGTATTGAATAGTTAATGTTACCAAGAACGTTGTGTATTGGCTTTCTCACTTACCGGACTGATTTTACGTTTAGGGATTCTACAATAAGATTCTTTGTGCAGATATTCTGCCATAAGTTTCGTTCATTTTGTCAATATTACCGTATATTTGATTGCAACGGGTCTGCTGGTACTGTTGAATAAAGCAAATATTCAGCAACTCTCTGTACATGCAGTTCAGTTCAATAAGAACAAAACATGTAATGACTCAGGCAGTGTGCTATTGGTTGTCTCATCTTTGGCACTAGTCAATTTCCGAGGTAATTGCCCTTTCTATTGTAAAGAAGCTGTTTTGTAATAGAAATCTGTGATTTTGTGTTCTTCTGTTTGAATAGAATACCAAG

Ace file of the UniGene sp_v3.0_unigene37211

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB2 n=3 Tax=Pinus RepID=Q27IN8_PINTA	-	-	92%
FL-Next	tr=R2R3-MYB transcription factor MYB2; Pinus taeda (Loblolly pine).	-	-	97%
Sma3	R2R3-MYB transcription factor MYB2	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G63910.1	AtMYB103, MYB103 myb domain protein 103 chr1:23719968-23721625 REVERSE LENGTH=370	2.0e-18	88%
RefSeq	Arabidopsis thaliana	NP_176575.1	myb domain protein 103 [Arabidopsis thaliana]	3.0e-18	88%
RefSeq	Populus trichocarpa	XP_002313334.1	predicted protein, partial [Populus trichocarpa]	2.0e-19	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q27IN8

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 495 - 449

Fln protein: MAGLQRCGKSCRLRWINYLRPDIRRGNFSPNEEKLIIHLHTMVGNRLVNFIFASYFAESLVIA*SFLYSTLKFAQL***HSRSL*KNISFFCSCIQHWAASA*LKEKHFLSF*NTFCHSICSGQCINKLNMRRWAYIASHLPGRTDNEIKNYWNSWIKKKLAKAEIISKNIEASKVHNNLPQFLFEESAILGNESKLLKPEMNTDGHAAPQSHVLPSKENCETFPLWDYKMINHSTTRNSQYEMEDSKTALTIDSLLIRTDSETGAIREFNTWDPSGILTNSSSKNCKNSDFQYILHRDNGQQVQGLPVSNTWHGYSSLNPIEGSFYYNPNSESSNGVHTTSSINESDFMRSLDMGPLIYSHHETLDPADHANVATMWESGSSSNGVDLGYSECLYSGEQYNHGTENSCSYLPPLYDVSEESAAIDIKHSGNNSLRYLEQIQNNEINISQEMDAIQQIFEQNSNLVTTIHYCLGSHSPVSDSHHHHHRPQDAFD*

Protein Length: 496

Fln nts: TGGTTATGGCTGTTGGAGTGAAGTTCCTGAGAAATCAGGTACTCATGCTATTCTCTCCCATTATTCTTGCTGTTTTCAAGGAAACCTTAGGGCTATAATGTGGGTAGCCAGTACTGAAAAGATCCATTGAACATCTAATGTAGAGAACTTGTAATGGTTGATCTGCCCAATGTGATTTTTTCCATACTTAGTTCAAGTCGTGTTGGTATGGGTGCAGAATACACTGCAAATTGACCTGACATGATCAGTTCATCGGTGTAAAGCCTAAAATTATGTTCAGTACATTACCTATCACATGCTTGCTTTCTCGGCCTCCTCATCCTCATGCCATGTCAATAATAATTTTAAAGTTATCTGAATTCATGTGCTTAGATCTGAATTTGCAGGCATTAATTTGTAGATATTTTGGATAATCAACGTAGACACTATGGCTTTTTTGAGCATTAGCTTCTACTGTAAACAGAATATTGCTGACATTGCTGGCTACTAGAAACAAAAATGCCGGAAGCTTAAAGTGTAGAACGTGGTTTCTCATCGCTTAATATTTGGTTTC_-_ATGGCAGGTCTTCAACGTTGTGGAAAGAGCTGCAGATTACGATGGATCAATTATTTGAGACCTGATATCAGGCGGGGTAATTTCAGTCCAAATGAAGAGAAGCTTATCATCCATCTGCATACTATGGTTGGAAACAGGTTGGTTAATTTCATATTTGCTTCCTACTTTGCAGAGTCTTTGGTGATAGCATAGTCATTCTTGTATTCAACATTGAAATTCGCACAATTATAGTGATAACATTCTCGTTCTCTCTGAAAAAACATCTCTTTCTTTTGTTCTTGCATTCAACATTGGGCTGCCTCAGCCTAACTGAAAGAAAAACACTTTCTATCATTCTAAAACACTTTCTGTCATTCTATTTGTTCTGGGCAGTGCATTAATAAATTAAATATGCGCAGGTGGGCATACATAGCATCCCATTTACCTGGAAGAACAGATAATGAGATCAAAAACTACTGGAACTCTTGGATAAAGAAAAAGCTTGCTAAGGCTGAAATAATCTCAAAGAATATTGAGGCTTCCAAAGTACATAATAATCTGCCCCAGTTCTTGTTCGAAGAATCTGCAATTCTGGGCAATGAAAGCAAGCTGCTAAAGCCTGAGATGAATACTGATGGGCATGCAGCTCCTCAGAGCCATGTTCTCCCTTCAAAGGAAAATTGTGAAACATTTCCTTTATGGGATTATAAGATGATCAATCATTCAACCACAAGGAATTCTCAATATGAGATGGAAGACAGCAAAACTGCTCTTACCATCGATAGCCTTCTAATTCGCACGGATTCAGAAACAGGAGCTATTAGAGAATTCAATACTTGGGATCCTTCTGGAATTCTGACTAACTCTAGCAGCAAAAACTGCAAAAACAGTGATTTCCAATATATATTACATCGGGACAATGGTCAGCAGGTTCAAGGACTTCCAGTTTCAAATACATGGCATGGCTACAGTAGCTTGAACCCAATTGAAGGGTCCTTTTATTACAATCCAAATTCAGAAAGCAGTAATGGAGTTCACACAACATCTTCTATAAATGAGAGTGACTTCATGAGATCGCTGGATATGGGGCCATTAATTTATTCTCATCATGAAACACTGGATCCTGCTGATCATGCTAACGTAGCTACAATGTGGGAATCGGGTTCCAGCTCTAATGGGGTTGATTTAGGTTATTCCGAGTGCCTATACAGTGGTGAACAATACAACCATGGCACTGAAAACAGTTGCAGCTATTTGCCTCCACTCTATGATGTCAGTGAAGAATCTGCAGCCATTGATATAAAACACAGTGGCAACAATTCACTGAGATATCTGGAACAAATCCAAAATAATGAGATCAATATATCCCAAGAAATGGATGCCATTCAGCAAATATTTGAGCAAAATTCAAACCTAGTTACAACAATTCATTATTGCTTGGGATCTCATTCTCCAGTGTCAGATTCTCATCATCATCACCATCGTCCTCAAGATGCTTTTGATTGATCTCAATCGTCACCACAGACTTCAGATCAGCTCTTCATCTCTCAGAGCGTAGAGCTGCTGGTAGTACTTTTACTGGTTTGTTTTGGGTATTCTAGGTTTTTTACTGTCTCAACATACGTTCAACCAACTGTCCAGACTACGTACACGTTATTCATGATTTACTGGACCCTGCATACCTAATCACTGCATGGTATTTACCTCTTTAAACCTTGTTCTATAAGGATGCCATTTTCCCTTTGTTCAACTATTACCAAATTGATTTATTCGTATTGAATAGTTAATGTTACCAAGAACGTTGTGTATTGGCTTTCTCACTTACCGGACTGATTTTACGTTTAGGGATTCTACAATAAGATTCTTTGTGCAGATATTCTGCCATAAGTTTCGTTCATTTTGTCAATATTACCGTATATTTGATTGCAACGGGTCTGCTGGTACTGTTGAATAAAGCAAATATTCAGCAACTCTCTGTACATGCAGTTCAGTTCAATAAGAACAAAACATGTAATGACTCAGGCAGTGTGCTATTGGTTGTCTCATCTTTGGCACTAGTCAATTTCCGAGGTAATTGCCCTTTCTATTGTAAAGAAGCTGTTTTGTAATAGAAATCTGTGATTTTGTGTTCTTCTGTTTGAATAGAATACCAAG

Fln Alignment:

Contig37211___AGLQRCGKSCRLRWINYLRPDIRRGNFSPNEEKLIIHLHTMVGNR
Q27IN8_______________SGLQRCGKSCRLRWINYLRPDIRRGNFSPNEEKLIIHLHTMVGNR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1569		66		33	0.997452
1573		66	33		0.997452
1574	66		33		0.997452
1575	66		33		0.997452
1637	14			85	0.993533
1639	16			16	0.988813
1640		85	14		0.993533
1641	14			14	0.984337
1746	85		14		0.993533
1771	11	88			0.923564
1783	11		88		0.923564
1787		88		11	0.923564
1794		87		12	0.992554
2137		25	75		0.996473
2138	25		75		0.996473
2139			50	50	1.0
2275		50		50	1.0
2591	20	80			0.995493
2663	33		66		0.997452
2668	33		33	33	0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
1999	2010	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain