SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene37088

Length: 397 nt

UniGene Fasta

>sp_v3.0_unigene37088
AGACATGCAAATCTCTCGTTCAGCTACGATTAGGTGATAACAAGCTCACTGGAAGTCTTCCTGTTGAGCTTACAAAACAGGTAAATTTGTCTGCTATTGAACTCTACCAGAACCAATTTACCGGGCCAATTCCACCAGAGATAGGGAACTGCACAAGTCTGGAGAGGCTTGACATATCCAATAATTATTTTGAGGCTTTCTTCCTCCAGAGATAGGGAGACTGTCAGAGCTAGTCAGTTTCAATATCTCTTCAAACGAGCTCATTGGAAGCATTCCTTCGGAGCTTGTGAATTGTACTAAGCTCCAAAGGCTTGATCTTAGCAGAAACCATTTTACTGGTCATTTACCACAAAATCTTGGCACTCTTGTCCATTTGGAATTGCTGATGCTTCTGACA

Ace file of the UniGene sp_v3.0_unigene37088

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBb0116K07.19 protein n=5 Tax=Oryza sativa RepID=Q7F8X5_ORYSJ	-	-	9.0e-34	61%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	47%

Source	Gene names
Sma3	AT2G33170; AT5G63930; At1g17230; At1g17230/F20D23_7; At2g33170; At5g63930; B1364A02.24; CLL6; F20D23.7; GSVIVT00009046001; GSVIVT00014274001; GSVIVT00020450001; LRR-RLK; OSIGBa0145C12.4; OSJNBb0002J11.4; OSJNBb0116K07.19; Os07g0152200; OsI_24925; OsJ_2312

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein chr2:14056371-14059829 REVERSE LENGTH=1124	3.0e-32	60%
RefSeq	Arabidopsis thaliana	NP_180875.1	putative leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana]	4.0e-32	60%
RefSeq	Populus trichocarpa	XP_002317600.1	predicted protein [Populus trichocarpa]	3.0e-33	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 458 aas, your sequence is shorter than subject: 132 - 1145

Fln protein: TCKSLVQLRLGDNKLTGSLPVELTKQVNLSAIELYQNQFTGPIPPEIGNCTSLERLDISNxxF*GFLPPEIGRLSELVSFNISSNELIGSIPSELVNCTKLQRLDLSRNHFTGHLPQNLGTLVHLELLMLLT

Protein Length: 133

Fln nts: AGACATGCAAATCTCTCGTTCAGCTACGATTAGGTGATAACAAGCTCACTGGAAGTCTTCCTGTTGAGCTTACAAAACAGGTAAATTTGTCTGCTATTGAACTCTACCAGAACCAATTTACCGGGCCAATTCCACCAGAGATAGGGAACTGCACAAGTCTGGAGAGGCTTGACATATCCAATAAxxxATTTTGAGGCTTTCTTCCTCCAGAGATAGGGAGACTGTCAGAGCTAGTCAGTTTCAATATCTCTTCAAACGAGCTCATTGGAAGCATTCCTTCGGAGCTTGTGAATTGTACTAAGCTCCAAAGGCTTGATCTTAGCAGAAACCATTTTACTGGTCATTTACCACAAAATCTTGGCACTCTTGTCCATTTGGAATTGCTGATGCTTCTGACA

Fln Alignment:

Contig37088___TCKSLVQLRLGDNKLTGSLPVELTKQVNLSAIELYQNQFTGPIPPEIGNCTSLERLDISNNxF*GFLPPEIGRLSEL-VSFNISSNELIGSIPSELVNCTKLQRLDLSRNHFTGHL
Q9FEU2_______________SCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNxFSGQIPPEMGKCKRLEIALNLSWNNLSGSIPAQFSGLTKLASLDLSHNLLSGNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain