SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36934

Length: 1692 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36934

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMS1_RICCO	-	-	9.99995e-41	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	At1g13190; At1g13190/F3F19.21; At5g55670; F3F19.21; GSVIVT00030708001; Os09g0476100; OsI_31754; OsJ_29744; P0556A05.12; POPTRDRAFT_769044; POPTRDRAFT_803822; RCOM_0522060; RCOM_1083050; VITISV_015886;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55670.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr5:22544669-22546801 REVERSE LENGTH=710	2.0e-32	57%
RefSeq	Arabidopsis thaliana	NP_200378.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	2.0e-32	57%
RefSeq	Populus trichocarpa	XP_002312652.1	predicted protein [Populus trichocarpa]	3.0e-34	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A876

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 154 - 179

Fln protein: CRVEAWRDTRQECGQTLAWVDGAERSIIGE*ENQVMEMIWDQIMDTTI*IMKEGAGRVPLGIKRGEQKGIGVDLLIGDVAMIGKQIGIGIVTGRRKMDTWIRDRESGTGKMKMTGRKKDHQNLEAKAVLWKMKINVLDQRKWIMARGGGCNPN*

Protein Length: 155

Fln nts: GTCGTGACCTTGGCTGTCACTCAAAAGAACATGAGTGGGAGTGGAGGTGGCGGTGGCAGTGGGGGTGGAGGTCACTATGGTCAAGGTCTTCCAGGCCCTCCGATGGGAGGTCCACCGGGAGGGATGATGCATCCTCAAGGAATGATGGGTCAGGGATTTGATCCTACTTATGGGGCACATATGGGTAGGGGTGGTGGTTATGGAGGGTTTTCTTCTCATGGTCCTACTTTTCATGGGTTGATGCCGTCCTTCCCTCCTGTTGGAACAGTAGGCCTACCTGGAGTGGCTCCTCATGTCAATCCAGCTTTTTTTGGCAGGGGAGTGACTGCAAACGGCATGGCAATGATGCCGAGTGGAGGCATGGAGGGACACCAGACAGGAATGTGGGCAGACTCTGGCATGGGTGGATGGGGCGGAGAGGAGCATAATCGGAGAATGAGAGAATCAAGTTATGGAGATGATATGGGATCAGATTATGGATACAACGATATGAATCATGAAAGAGGGGGCAGGTCGAGTGCCTCTCGGGATAAAGAGAGGGGAACAGAAAGGGATTGGGGTGGATCTTCTGATAGGAGACGTCGCGATGATAGGGAAACAGATTGGCATAGGGATCGTTACCGGGAGGAGAAAGATGGATACATGGATCAGAGACAGAGAGAGCGGGACTGGGAAAATGAAGATGACTGGGAGAAAGAAAGACCATCAAAATCTCGAAGCAAAGGCCGTATTGTGGAAGATGAAGATCAACGTCCTCGATCAAAGGAAGTGGATTATGGCAAGAGGAGGCGGTTGCAATCCGAACTGA___ATGAATGACGTTGCCAGGCTATGTCTGGGAGTTAGAACTTGAATGCAGTTATTCTCTCCTTTTTCTAAAAGGGCATTTTCTGCAAGAAAACATTAAATTTCTGACTGGTTTCCAGGTCTAATTTTTAGAATATGGATTGCTATACAATTGAGGCAGCAACAATGCTCTGAAAGTTATGGACTGCAGTTGCCCGCAGTGCTATTTTAGTCAAGATGGCTTTGTGCTAGAAATGCATCCAATGCTGGGATCACATGAAGCAGAAGACAAAGAGTGTTGGCATGATTGCACAAAAGTAAGTTCCTAATAGGCATAAAAAGAAGGGGAAGATTTAGTTCAATTAGGTGTGAAAAAAGGGTTGCTTTATCTTTAGTTTTCAGAGGCAATACTCACTGATTCCCTGCTTAAAGTTTCTCTCCATATTTTCAAGGAAATGACTGAAATATTTTCAGCAACTAGTATTAGTATGATTTAAACTTCAAGTTTCAATGACTTATCTGGGTTACCTGTTTTCTTTAAATATGCTTTCTTGCCCAGATTGGCTGCTTTATGAAATGGGAGGGATTTGACATGGAATATTGCCTATTTTCAATGAGTGATTCTTGTGGATTTACATATTTATGATGATTGGGCTTAACCTTCCCACTCTTACCTGTGTCATTTTTTTCTGTTACCTTCCTCTGGTGACTGTGACTGTTCTTTGGCATGCCAAAAAAACATTTGATGTAGTAGTATGATATGGTGCGGACTGCACCAGAAAGCCCTTTTCAATCTGTTTGGTTGGTGGTTCATATTGTAACATGGTTCTAAGAATTTATTTATACCATAGTTGAAAGTGAAATCTCTCTTCCTATAACACTATTTTGGAACATGCCTTGAGATTCTCT

Fln Alignment:

Contig36934___WRDTRQECGQTLAWVDGAERSIIGE*ENQVMEMIWDQIMDTTI*IMKEGAGRVPLGIKRGEQKGIGVDLLIGDVAMIGKQIGIGIVTG---RRKMDTWIRDRESXXXXXXXXXXXXDHQNLEAKAVLWKMKINVLDQRKWIMARG
D5A876_______________WRDIMQGCGQILY---GEEMGMVEEWVNQAMERMRDQSMLMLRKTMREEGGPVFNGLEIAALKMIKWALLKRDSGITGKQTGVGGGIGIGTMKELDIMINGRGGVIGKAKGL------RGQEASPMLWKKQTGMPFLEKQSMLRG

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
169		40		40	1.0
170	40		60		1.0
172		40	60		1.0
173	20		80		0.995493
174		20	40	40	1.0
175			80	20	0.995493
179	60	40			1.0
184		37	62		1.0
185		25	75		1.0
187	37	37	12		1.0
188			87	12	0.992554
189		12	50	37	1.0
190	12	12	75		0.975346
191	50	12	37		1.0
192		50		50	1.0
193		50	37	12	1.0
194	12	12	37	37	1.0
195	12			87	0.992554
198		37		62	1.0
200	62		37		1.0
202		37	62		1.0
203	33		66		1.0
204	66	33			1.0
205			66	33	1.0
206		33	66		1.0
207	33		66		1.0
921		83		16	0.994512
1172	62	12			1.0
1173	12	12		75	0.975346
1174	12	87			0.992554
1175	12			87	0.992554
1633		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain